PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010904562.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 497aa MW: 54849.4 Da PI: 6.3436

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010904562.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.6	0.00026	392	424	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++++ + +K + a++L +A++YI+ Lq XP_010904562.1 392 DKITALQQIVSPF-----GKTDTASVLYEAINYIRFLQ 424 7888889988887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.991	374	423	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.5E-10	389	439	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.8E-9	389	432	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.76E-4	392	428	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MAAQEGSEAS VASSSTAPNN WWEVHTNPLS SWNTMSRWQP PNHHSNSSCD EDISNTTTSF 60 TNTSNHSGLT MDSSSANLSG EPVENNLWSQ VLLNVGTGGD LHNNHENGEN FLEVLTSKSM 120 TTEIFDPACD YLKKMDSSWE FTQQSSLNSL DKQLTSYHGS IMGPERMTNL SDLVSNWSIA 180 PPNPQLNPPS TCNVSINPSL AQYSTSNISH IKHEIPHSPS YPGSGMGGET NTGYVPCYDH 240 DTKEESQHHQ DMGASMPSFL RPFSTNNIGY QTGVSNLLMG LNNKFCSGMT DVPWSNTRNL 300 SDLISFTDSL NKPAVDLRAS KSYIKVSDSS DNKKQVFDNS STRGNGRSSA TTSEGKKKRS 360 DDSSETLFKK SKHENSTTSS LKLQAPKVKL GDKITALQQI VSPFGKTDTA SVLYEAINYI 420 RFLQEQVQLL SDPYMKSGAC KDHNTWGGLE RKDKSEPKLD LRSRGLCLVP ISCTPQAYRD 480 NNGPDYWTPP YRSCLYR

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MAAQEGSEAS VASSSTAPNN WWEVHTNPLS SWNTMSRWQP PNHHSNSSCD EDISNTTTSF  60
TNTSNHSGLT MDSSSANLSG EPVENNLWSQ VLLNVGTGGD LHNNHENGEN FLEVLTSKSM  120
TTEIFDPACD YLKKMDSSWE FTQQSSLNSL DKQLTSYHGS IMGPERMTNL SDLVSNWSIA  180
PPNPQLNPPS TCNVSINPSL AQYSTSNISH IKHEIPHSPS YPGSGMGGET NTGYVPCYDH  240
DTKEESQHHQ DMGASMPSFL RPFSTNNIGY QTGVSNLLMG LNNKFCSGMT DVPWSNTRNL  300
SDLISFTDSL NKPAVDLRAS KSYIKVSDSS DNKKQVFDNS STRGNGRSSA TTSEGKKKRS  360
DDSSETLFKK SKHENSTTSS LKLQAPKVKL GDKITALQQI VSPFGKTDTA SVLYEAINYI  420
RFLQEQVQLL SDPYMKSGAC KDHNTWGGLE RKDKSEPKLD LRSRGLCLVP ISCTPQAYRD  480
NNGPDYWTPP YRSCLYR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010904562.1	0.0	transcription factor bHLH111
TrEMBL	A0A2H3ZAX3	0.0	A0A2H3ZAX3_PHODC; transcription factor bHLH110
STRING	XP_008811082.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7169	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	5e-55	bHLH family protein