PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.L02817.1.p

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 593aa MW: 68374.2 Da PI: 7.2434

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.L02817.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	361	1.7e-110	221	590	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 ++lL++cA+av+s+d++ a+alL++++++asp gd +qRla+yf+++L+arla+++s++y+ l ++t+ ++ l+a++l+ ++P+ + s Eucgr.L02817.1.p 221 RTLLIQCAQAVASNDHRSANALLNEIRKHASPFGDGTQRLAHYFANGLEARLAGTGSQIYRGLVNRKTT---AADMLNAYHLYLAACPFQRYS 310 689**********************************************************999999...9**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 + + +++ + v+ + r+HiiDf+i +G+ Wp+L+q L+ Rp + p+lRiTg++ p++g +++++etg+rLa++A++++vpfe+n+ +akr Eucgr.L02817.1.p 311 NTVSCRMVIDTVADKMRIHIIDFGILYGFRWPTLIQLLSRRPCP-PKLRITGIDLPQPGfrPAQRIKETGRRLANYAQSFNVPFEYNA-IAKR 401 ***********************************99865.9********9*************************.7* PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 +e +eleeL+++++E+++Vn++++ ++l+de+v+ es+rd vL+l+++ +P+++++ + ++n++ F++rf eal+++s+lfd+l++ +p e Eucgr.L02817.1.p 402 WEFIELEELKIDRDEVTIVNCMFRFENLFDETVEEESPRDIVLNLIRRAQPDLFIHGVINGNYNAPFFVTRFREALHHFSSLFDMLDTIIPCE 494 ******************************************************************************************* PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 ++er+ +E++ l+re+ n +aceg er+er e++++W+ r ++aGF +vpls + a+ + ++ + + + v+e ++l++gWk+r L+++S Eucgr.L02817.1.p 495 NQERMLIEKVTLEREALNTIACEGWERVERPESYKQWQLRNMRAGFVQVPLSRRLAQFVFNKIASRYHKDFVVDEVGKWLLIGWKGRFLYAFS 587 *************************************************98887776666666566******************* PP GRAS 372 aWr 374 W+ Eucgr.L02817.1.p 588 TWK 590 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.465	194	570	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.9E-108	221	590	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence Send to blast
CGEMHHLVDV APFSNECRDA PDTEETEFSD AVFEYISRIL MEEDIEEKTC MLQDSLDLLS 60 AEKSFYEVLG KKYPPSPEPK RPDLCSESRF VRQFRMGVEE SSKFLPNQAT TELLYQEPYG 120 KIDKVDRLGA LKRKESLHME EGNMEERSSK QAFVHEESVL RSDAFDAVLL NIQGEGLAHL 180 MNLRASLKHR VNEIAHKIEE PKGGRGHGKK KRGKVEVVDV RTLLIQCAQA VASNDHRSAN 240 ALLNEIRKHA SPFGDGTQRL AHYFANGLEA RLAGTGSQIY RGLVNRKTTA ADMLNAYHLY 300 LAACPFQRYS NTVSCRMVID TVADKMRIHI IDFGILYGFR WPTLIQLLSR RPCPPKLRIT 360 GIDLPQPGFR PAQRIKETGR RLANYAQSFN VPFEYNAIAK RWEFIELEEL KIDRDEVTIV 420 NCMFRFENLF DETVEEESPR DIVLNLIRRA QPDLFIHGVI NGNYNAPFFV TRFREALHHF 480 SSLFDMLDTI IPCENQERML IEKVTLEREA LNTIACEGWE RVERPESYKQ WQLRNMRAGF 540 VQVPLSRRLA QFVFNKIASR YHKDFVVDEV GKWLLIGWKG RFLYAFSTWK PA*

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence Send to blast

CGEMHHLVDV APFSNECRDA PDTEETEFSD AVFEYISRIL MEEDIEEKTC MLQDSLDLLS  60
AEKSFYEVLG KKYPPSPEPK RPDLCSESRF VRQFRMGVEE SSKFLPNQAT TELLYQEPYG  120
KIDKVDRLGA LKRKESLHME EGNMEERSSK QAFVHEESVL RSDAFDAVLL NIQGEGLAHL  180
MNLRASLKHR VNEIAHKIEE PKGGRGHGKK KRGKVEVVDV RTLLIQCAQA VASNDHRSAN  240
ALLNEIRKHA SPFGDGTQRL AHYFANGLEA RLAGTGSQIY RGLVNRKTTA ADMLNAYHLY  300
LAACPFQRYS NTVSCRMVID TVADKMRIHI IDFGILYGFR WPTLIQLLSR RPCPPKLRIT  360
GIDLPQPGFR PAQRIKETGR RLANYAQSFN VPFEYNAIAK RWEFIELEEL KIDRDEVTIV  420
NCMFRFENLF DETVEEESPR DIVLNLIRRA QPDLFIHGVI NGNYNAPFFV TRFREALHHF  480
SSLFDMLDTI IPCENQERML IEKVTLEREA LNTIACEGWE RVERPESYKQ WQLRNMRAGF  540
VQVPLSRRLA QFVFNKIASR YHKDFVVDEV GKWLLIGWKG RFLYAFSTWK PA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	6e-44	226	591	24	379	Protein SCARECROW
5b3h_D	6e-44	226	591	24	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.L02817.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010042112.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A059A778	0.0	A0A059A778_EUCGR; Uncharacterized protein
STRING	XP_010042112.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	Eucgr.L02817.1.p