PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.L02683.1.p
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 307aa    MW: 34711.6 Da    PI: 8.1095
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.L02683.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.14.4e-3371352128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                       ++GfrF Pt+eel++ yL+ kv g    +  vi+e+ d y ++PwdLp       ++ ++  +wyfF+++   +++++r +r+t+sg Wk t 
  Eucgr.L02683.1.p   7 QVGFRFLPTEEELLNGYLTSKVLGYVDGC--VIPELdDFYAWDPWDLPGlyqqisNIPSDGLDWYFFCPSPYLAQNSERVKRQTRSGKWKITS 97 
                       68**********************99777..8999989**********53554444444666******************************* PP

               NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ e++++ +++l+g+k++Lvfykg+a++     Wvmhey+l
  Eucgr.L02683.1.p  98 QKDEIKARdTKALIGTKRILVFYKGHAET----GWVMHEYHL 135
                       ******9966777**********888765....7*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-364159IPR003441NAC domain
PROSITE profilePS5100538.6456159IPR003441NAC domain
PfamPF023652.3E-228135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGLNRFQVGF RFLPTEEELL NGYLTSKVLG YVDGCVIPEL DDFYAWDPWD LPGLYQQISN  60
IPSDGLDWYF FCPSPYLAQN SERVKRQTRS GKWKITSQKD EIKARDTKAL IGTKRILVFY  120
KGHAETGWVM HEYHLNPKLL NGYSSTFQIP YILCRLKRKP SESLDISPSF EGGSSVVYDT  180
PVASQRELTE NSIQEVSTSK DRTSVQDFAS QVSPVSINLL LAENFGVVRE FFNMRVFCPM  240
SVIISSNCGI TPSISDARRQ LAGLQLVWLF PSAAPLVRRW PGTVHKADCF NHLAKQIDRS  300
VIPNLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-20916320169NO APICAL MERISTEM PROTEIN
1ut4_B6e-20916320169NO APICAL MERISTEM PROTEIN
1ut7_A6e-20916320169NO APICAL MERISTEM PROTEIN
1ut7_B6e-20916320169NO APICAL MERISTEM PROTEIN
3swm_A6e-20916323172NAC domain-containing protein 19
3swm_B6e-20916323172NAC domain-containing protein 19
3swm_C6e-20916323172NAC domain-containing protein 19
3swm_D6e-20916323172NAC domain-containing protein 19
3swp_A6e-20916323172NAC domain-containing protein 19
3swp_B6e-20916323172NAC domain-containing protein 19
3swp_C6e-20916323172NAC domain-containing protein 19
3swp_D6e-20916323172NAC domain-containing protein 19
4dul_A6e-20916320169NAC domain-containing protein 19
4dul_B6e-20916320169NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.L02683.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026029.11e-81PREDICTED: protein NTM1-like 9
TrEMBLA0A059BC721e-130A0A059BC72_EUCGR; Uncharacterized protein
STRINGXP_010041970.11e-140(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16613212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.27e-37NAC 014