PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.L02674.1.p
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 360aa    MW: 40404.3 Da    PI: 10.1239
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.L02674.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.31.5e-36561772128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       p GfrF Ptd+el+ +yLk+kv+g+++++++++++vd+yk++P++L      +e+ewyfF++rd+ky+ g+r+nr    g+W+   k+  v  
  Eucgr.L02674.1.p  56 PIGFRFVPTDQELIIHYLKPKVTGDPIPVSDIFADVDLYKFDPRTLI-----DEDEWYFFTPRDRKYQCGSRPNRCSPGGFWRVPRKESFVRM 143
                       89********************************************6.....789******************************99999998 PP

               NAM  95 kkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                        +++++g k++L+fy+g ++++g +t   mheyrl
  Eucgr.L02674.1.p 144 -ENKTIGYKNSLAFYRGdSKRQGDRTALNMHEYRL 177
                       .9999**********9978899***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-4352202IPR003441NAC domain
PROSITE profilePS5100544.20955204IPR003441NAC domain
PfamPF023653.6E-2056177IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEKNDQSHNR DRDDQLKGMH VDGKLKVACT PSSSRELVAP PWPSSVAVAE FPFKIPIGFR  60
FVPTDQELII HYLKPKVTGD PIPVSDIFAD VDLYKFDPRT LIDEDEWYFF TPRDRKYQCG  120
SRPNRCSPGG FWRVPRKESF VRMENKTIGY KNSLAFYRGD SKRQGDRTAL NMHEYRLKED  180
EKRDRPRCAL WQLDEWVLCK VYTPRHAKHP KNGQKSDVPP KKRNEQNLDQ PDGHNAPTTT  240
GKKSDHPLKK RNGQNLDQPN GGGHNAALTA GKKSVLPTKK RSKQKLGQSD GIGHNAPSTA  300
GQKSEVPLKK TNEQNLDQPD RDGDNASTTA SKKSASLTCG PAGRKSQASY SAAHQQFSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-375320215163NO APICAL MERISTEM PROTEIN
1ut4_B4e-375320215163NO APICAL MERISTEM PROTEIN
1ut7_A4e-375320215163NO APICAL MERISTEM PROTEIN
1ut7_B4e-375320215163NO APICAL MERISTEM PROTEIN
4dul_A4e-375320215163NAC domain-containing protein 19
4dul_B4e-375320215163NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.L02674.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018720398.11e-100PREDICTED: protein ATAF2-like
TrEMBLA0A059D9B12e-96A0A059D9B1_EUCGR; Uncharacterized protein
STRINGXP_010041964.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.29e-43NAC domain containing protein 47