PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.L02216.1.p | ||||||||
Common Name | EUGRSUZ_L02216 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 224aa MW: 25696.7 Da PI: 10.0682 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 67.9 | 1.5e-21 | 15 | 105 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 fk+ sd+l++grl +pkkf++++g++ s + l+ +sg+ Wev+l ++ ++++l++GW +Fvk +k g f+vF+++g s f +v Eucgr.L02216.1.p 15 FKII-LSDALQNGRLGIPKKFVRKYGSN--LSDLVFLQVPSGQAWEVEL--VRRTDGVWLRRGWPDFVKHYAIKHGHFLVFRYEGGSAF--RV 100 4444.59******************988..888999999**********..99999****************************99999..99 PP EEE-S CS B3 95 kvfrk 99 +f+k Eucgr.L02216.1.p 101 VIFDK 105 99987 PP | |||||||
2 | B3 | 38.7 | 1.8e-12 | 163 | 219 | 44 | 98 |
-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 44 rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 r W ++++ +++ ++ + +GWk Fv++n+Lk+gD+++F+l +++ l+v++fr Eucgr.L02216.1.p 163 RFWLARYKFgiYGRKTQVKINSGWKLFVQDNNLKVGDICIFELLDSDLIVLKVSIFR 219 678888877667888889************************987677777888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.2E-28 | 7 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.46E-27 | 7 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.84E-21 | 12 | 104 | No hit | No description |
PROSITE profile | PS50863 | 14.762 | 13 | 106 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.1E-19 | 14 | 106 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-18 | 15 | 105 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0023 | 133 | 221 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.9E-13 | 142 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.4E-10 | 163 | 219 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.64E-10 | 163 | 219 | No hit | No description |
PROSITE profile | PS50863 | 11.011 | 165 | 221 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-11 | 169 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MVGGRHFESQ TPHFFKIILS DALQNGRLGI PKKFVRKYGS NLSDLVFLQV PSGQAWEVEL 60 VRRTDGVWLR RGWPDFVKHY AIKHGHFLVF RYEGGSAFRV VIFDKSASEI KYPIITELPK 120 REENEGDTGG EKSEALKRAA SFQSSNPFFL TLMQPSLICH SLRFWLARYK FGIYGRKTQV 180 KINSGWKLFV QDNNLKVGDI CIFELLDSDL IVLKVSIFRY SID* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.L02216.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010041490.1 | 8e-94 | PREDICTED: B3 domain-containing protein At3g18960 | ||||
TrEMBL | A0A058ZRB6 | 1e-163 | A0A058ZRB6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010041490.1 | 3e-93 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 9e-27 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.L02216.1.p |