PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.L01802.1.p | ||||||||
Common Name | EUGRSUZ_L01802 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 148aa MW: 16926.4 Da PI: 9.8975 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.5 | 1e-12 | 36 | 142 | 2 | 96 |
EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvv 81 +k lt+sd + ++rl + ++f+++h + ++ ++ +++++d + + ++ + ++ +sg+yvl++GW keFvk gL +gD v Eucgr.L01802.1.p 36 KKRLTQSDLGHLSRLLIGRDFVKSHflrwmneetvrQVESSKGADVIVRDMDTcSEHRLVFVFWASSGSYVLKGGWiKEFVKRRGLAVGDEVG 128 5889************************98888877444457788999996666778888888*************999***********999 PP EEE-SS.SEE..EEEE CS B3 82 Fkldgr.sefelvvkv 96 ++ + s ++++++ Eucgr.L01802.1.p 129 IYW--EpSASKFHFSL 142 995..44555457666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.69E-16 | 34 | 143 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.41E-17 | 35 | 143 | No hit | No description |
SMART | SM01019 | 0.0061 | 35 | 146 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.5E-16 | 36 | 143 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.7E-9 | 37 | 141 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 148 aa Download sequence Send to blast |
MAKYKRTQRG KKEASGCDPE EVSTELTLLF DPYKIKKRLT QSDLGHLSRL LIGRDFVKSH 60 FLRWMNEETV RQVESSKGAD VIVRDMDTCS EHRLVFVFWA SSGSYVLKGG WIKEFVKRRG 120 LAVGDEVGIY WEPSASKFHF SLLHKAN* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.L01802.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010041071.2 | 1e-105 | PREDICTED: uncharacterized protein LOC104429979 | ||||
TrEMBL | A0A058ZTH9 | 1e-104 | A0A058ZTH9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010041071.1 | 1e-105 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM456 | 9 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33720.1 | 1e-30 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.L01802.1.p |