PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.L01673.1.p
Common NameEUGRSUZ_L01673, LOC104429840
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family RAV
Protein Properties Length: 338aa    MW: 37571.5 Da    PI: 9.4436
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.L01673.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.24.2e-1363111155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+ykGV   + +grW A+I++      ++r+++g+f  ++eAa a++ a+k+++g
  Eucgr.L01673.1.p  63 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWIGTFSEEDEAAMAYDIAAKCFRG 111
                       89****9888.8*********3.....5**********99*************98 PP
2B395.53.6e-30195300199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+ ++sdv++++r+v+pk++ae+h       +  + +++ lt+ d+ g++W++++ y+++s++yvlt+GW++Fvk++ L++gD++ F+++ 
  Eucgr.L01673.1.p 195 FQKEVMQSDVGNLNRFVIPKQHAEKHfplhnrsSPTTSKGTLLTFIDSGGKVWRFRYLYWNSSRSYVLTRGWSRFVKEKSLRAGDIISFHRSA 287
                       99**************************99987444558899************************************************987 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                         e++l++   r+
  Eucgr.L01673.1.p 288 GPEKQLHINYMRR 300
                       7888888877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-863111IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1663120IPR016177DNA-binding domain
CDDcd000184.29E-2463118No hitNo description
Gene3DG3DSA:3.30.730.102.5E-1964120IPR001471AP2/ERF domain
PROSITE profilePS5103218.74264119IPR001471AP2/ERF domain
SMARTSM003801.3E-2764125IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.1E-36188300IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.93E-30192299IPR015300DNA-binding pseudobarrel domain
CDDcd100173.04E-27194286No hitNo description
PfamPF023623.2E-26195299IPR003340B3 DNA binding domain
SMARTSM010199.7E-24195301IPR003340B3 DNA binding domain
PROSITE profilePS5086314.254195301IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDGNIICIDE LSSTSDSNVI PLPSKSWQPP TPPQSLCRLG SGTSVTLDCE GGIKAESRKL  60
NPSKYKGVVP QPNGRWGAQI YEKHQRVWIG TFSEEDEAAM AYDIAAKCFR GQAAVTNFNQ  120
RSNTEDYDLE AAFLISHSKA EIVDMLREHA YYEELEQCKR KYVNANGDGK RVSMTEVLGD  180
PSGPGRAAAA CHLLFQKEVM QSDVGNLNRF VIPKQHAEKH FPLHNRSSPT TSKGTLLTFI  240
DSGGKVWRFR YLYWNSSRSY VLTRGWSRFV KEKSLRAGDI ISFHRSAGPE KQLHINYMRR  300
SGLSQARPVH PVQKVRLFGV DIFQVSGTGG GVNCGGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-4419430213119DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.L01673.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010040940.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1
SwissprotQ9C6M51e-119RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A058ZSG90.0A0A058ZSG9_EUCGR; Uncharacterized protein
STRINGXP_010040940.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-121RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]