PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.L01473.1.p | ||||||||
Common Name | EUGRSUZ_L01473, LOC104429618 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 214aa MW: 23515.2 Da PI: 4.613 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.9 | 4.3e-19 | 42 | 141 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k l+ sd++k grlvlp+k+ae++ ++++e+ l+++d +g +W +++++ +++s++yvl+ G ++ +L++gD+v+F++ + e Eucgr.L01473.1.p 42 FEKMLSASDAGKIGRLVLPRKCAEAYfpPISQPEGLPLKVQDAKGSEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRLE-PE 132 89**************************555566778***************9989999999***9.********************766.77 PP E..EEEEE- CS B3 90 felvvkvfr 98 ++lv+++++ Eucgr.L01473.1.p 133 GKLVMGFRK 141 777777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-31 | 38 | 148 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.62E-20 | 39 | 141 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.11E-22 | 40 | 141 | No hit | No description |
PROSITE profile | PS50863 | 10.997 | 42 | 143 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.9E-20 | 42 | 143 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-16 | 42 | 141 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MAAPRGDARG RNQLLPRYWP RITDQELQQI SGDSNSVITP LFEKMLSASD AGKIGRLVLP 60 RKCAEAYFPP ISQPEGLPLK VQDAKGSEWI FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA 120 GDIVTFSRLE PEGKLVMGFR KASTAPSSDQ EKHSQAPEKK GHDGEDASIS EQRPEQQLEE 180 SSEQSDAHLQ GNMGKGGAEA EAGEEDVEEA NTI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yzy_C | 4e-70 | 20 | 145 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5yzz_C | 4e-70 | 20 | 145 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_C | 4e-70 | 20 | 145 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_G | 4e-70 | 20 | 145 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_K | 4e-70 | 20 | 145 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_M | 4e-70 | 20 | 145 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 4e-70 | 20 | 145 | 2 | 127 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.L01473.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010040774.1 | 1e-157 | PREDICTED: B3 domain-containing protein Os07g0563300 isoform X8 | ||||
Swissprot | Q0D5G4 | 2e-84 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A058ZT26 | 1e-156 | A0A058ZT26_EUCGR; Uncharacterized protein | ||||
STRING | XP_010040771.1 | 1e-127 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6857 | 25 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 5e-81 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.L01473.1.p |
Entrez Gene | 104429618 |