PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.L00754.1.p | ||||||||
Common Name | EUGRSUZ_L00754 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 135aa MW: 14814 Da PI: 8.4973 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.2 | 1.4e-38 | 6 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlka 92 +Ca+C +lrrkC++dC+lapyfp+++p++fa+vhk+FGasnv+k+l+ +++ +++++ yeA ar++dPvyG+vg+i++lqqq+ q ++ Eucgr.L00754.1.p 6 RCAGCNYLRRKCPQDCILAPYFPSSNPQRFACVHKIFGASNVTKMLQVTSPGAfTGGTAECISYEATARVQDPVYGCVGIITQLQQQITQIHS 98 6************************************************9999899************************************* PP DUF260 93 elallke 99 e+ ++k Eucgr.L00754.1.p 99 EIMKIKG 105 9988775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.611 | 5 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-36 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MSSFSRCAGC NYLRRKCPQD CILAPYFPSS NPQRFACVHK IFGASNVTKM LQVTSPGAFT 60 GGTAECISYE ATARVQDPVY GCVGIITQLQ QQITQIHSEI MKIKGEMVSS HTNLTRNCTE 120 NPQHRLNMHL APTC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-32 | 7 | 116 | 12 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-32 | 7 | 116 | 12 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.L00754.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018719836.1 | 1e-54 | PREDICTED: LOB domain-containing protein 23-like | ||||
Swissprot | P59468 | 6e-38 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A058ZVQ7 | 3e-96 | A0A058ZVQ7_EUCGR; Uncharacterized protein | ||||
STRING | Aquca_018_00023.1 | 5e-43 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 6e-36 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.L00754.1.p |