PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.L00348.1.p

Common Name

EUGRSUZ_L00348, LOC104428344

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 441aa MW: 47869.4 Da PI: 7.9918

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.L00348.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	100.2	1.2e-31	107	211	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87 f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ Eucgr.L00348.1.p 107 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGEf 199 89*************************966778999***********************************************665999 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 + +l++ ++r+ Eucgr.L00348.1.p 200 GKDRLFIDWRRR 211 999999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.8E-42	98	218	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.57E-29	104	212	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.87E-26	105	194	No hit	No description
Pfam	PF02362	3.5E-29	107	211	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.607	107	212	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-22	107	212	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MDFREAFVEF EEAQVVKGKQ NPFSYSSSSS SPSSSTSHHQ HTRGLFPVGN VSNGQWDTPM 60 GSWLAHGFDR EADGRSKPEL MDVSPPRDDE HSRPAAPAPP IEREHMFDKV VTPSDVGKLN 120 RLVIPKQHAE KYFPLDSSTN EKGLLLNFED RNGKPWRFRY SYWNSSQSYV MTKGWSRFVK 180 EKKLDAGDIV SFQRGVGEFG KDRLFIDWRR RPDAPDPPPM AAFQLPGHFS FHHRGSATAV 240 PWGPLLLRPG AAAGAMHMSA RDHSQASHLG PYRNSYGGGS GCSYGYGCGN VVSLNACPNS 300 SSVYYQLRSS IGAGIAPRQV SAGMVQVPQG AGGGGAGGNE PVVFDSVPVV HGKVAAKRLR 360 LFGVNMECPI SESDDECDIL SSTSISHASI SSQTHQMSSS SSQQPPLQLR LYNGTPLPTI 420 QAEFLNKGKA SVSSSLDLDI *

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MDFREAFVEF EEAQVVKGKQ NPFSYSSSSS SPSSSTSHHQ HTRGLFPVGN VSNGQWDTPM  60
GSWLAHGFDR EADGRSKPEL MDVSPPRDDE HSRPAAPAPP IEREHMFDKV VTPSDVGKLN  120
RLVIPKQHAE KYFPLDSSTN EKGLLLNFED RNGKPWRFRY SYWNSSQSYV MTKGWSRFVK  180
EKKLDAGDIV SFQRGVGEFG KDRLFIDWRR RPDAPDPPPM AAFQLPGHFS FHHRGSATAV  240
PWGPLLLRPG AAAGAMHMSA RDHSQASHLG PYRNSYGGGS GCSYGYGCGN VVSLNACPNS  300
SSVYYQLRSS IGAGIAPRQV SAGMVQVPQG AGGGGAGGNE PVVFDSVPVV HGKVAAKRLR  360
LFGVNMECPI SESDDECDIL SSTSISHASI SSQTHQMSSS SSQQPPLQLR LYNGTPLPTI  420
QAEFLNKGKA SVSSSLDLDI *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	7e-66	102	212	3	114	B3 domain-containing transcription factor NGA1
5os9_B	7e-66	102	212	3	114	B3 domain-containing transcription factor NGA1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269\|PubMed:16603651}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.L00348.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010039648.1	0.0	PREDICTED: B3 domain-containing transcription factor NGA1 isoform X1
Swissprot	O82799	9e-75	NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBL	A0A058ZWL1	0.0	A0A058ZWL1_EUCGR; Uncharacterized protein
STRING	XP_010039648.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1307	28	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	1e-59	B3 family protein

Link Out ? help Back to Top
Phytozome	Eucgr.L00348.1.p
Entrez Gene	104428344

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Lee BH, et al. The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs. Plant Mol. Biol., 2015. 89(4-5): p. 529-38 [PMID:26433582] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V DNA recognition by Arabidopsis transcription factors ABI3 and NGA1. FEBS J., 2018. 285(21): p. 4041-4059 [PMID:30183137] Sato H, et al. Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187 [PMID:30397148]