PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.L00002.1.p | ||||||||
Common Name | EUGRSUZ_L00002, LOC104428003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | bHLH | ||||||||
Protein Properties | Length: 150aa MW: 16536.8 Da PI: 8.4648 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.1 | 2e-05 | 33 | 72 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R +++ +++ +L++l+ + +K + a++L +A eYI+ L Eucgr.L00002.1.p 33 KERKEKLGEKIVQLQQLVSPY-----GKTDTASVLLEASEYIQFL 72 788899999*********999.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.9E-10 | 22 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.877 | 23 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.71E-12 | 25 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0025 | 29 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.79E-5 | 33 | 77 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MMEQKRSPCS VDHGTYTSLI PKRQKSDLSI SNKERKEKLG EKIVQLQQLV SPYGKTDTAS 60 VLLEASEYIQ FLHEQVKVLS APYLQTMPAT TMQEAEQYSL RSRGLCLVPL SCTAGFASTN 120 GADIWAPIKT TSPRLESQSR FSSEGSSFV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.L00002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010039305.1 | 1e-107 | PREDICTED: transcription factor bHLH113 isoform X1 | ||||
Refseq | XP_010039307.1 | 1e-107 | PREDICTED: transcription factor bHLH113 isoform X2 | ||||
Swissprot | Q7XJU2 | 1e-59 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A058ZYC2 | 1e-106 | A0A058ZYC2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010039305.1 | 1e-106 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3316 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 8e-62 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.L00002.1.p |
Entrez Gene | 104428003 |
Publications ? help Back to Top | |||
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