PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K03433.1.p
Common NameEUGRSUZ_K03433
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARF
Protein Properties Length: 455aa    MW: 50713.3 Da    PI: 8.1687
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K03433.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.7e-1610713598
                      EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                      +l+ +d++g+ W +++iyr+k++r++lt+GW++F  +++L +gD ++F  +g +++  +++v+r
  Eucgr.K03433.1.p 10 DLVTKDLRGNLWCFRHIYRGKPERHLLTRGWSDFLTSKKLVTGDACIFL-SG-RDGDVRIGVRR 71
                      68899*******************************************9.33.56656888876 PP
2Auxin_resp98.41e-3297179183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       a ha+st+++F+v+Y+P+a+ts F++ +++++ka+ + +s+G Rf+m+fe e + e+rl Gtvvg++dld++rWp+S W++Lk
  Eucgr.K03433.1.p  97 ALHAVSTGTMFTVYYRPWACTSGFIIGYQQYVKAMANDYSIGKRFRMQFEDELCGEQRLGGTVVGIEDLDQMRWPGSDWKCLK 179
                       689******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.053173IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-19284IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-15576IPR015300DNA-binding pseudobarrel domain
CDDcd100173.53E-11971No hitNo description
PfamPF023622.7E-131071IPR003340B3 DNA binding domain
PfamPF065071.6E-2997179IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
DKSQHHPVQD LVTKDLRGNL WCFRHIYRGK PERHLLTRGW SDFLTSKKLV TGDACIFLSG  60
RDGDVRIGVR RLMKSQTTTS SSILSGHSMR HGILASALHA VSTGTMFTVY YRPWACTSGF  120
IIGYQQYVKA MANDYSIGKR FRMQFEDELC GEQRLGGTVV GIEDLDQMRW PGSDWKCLKV  180
QWDSSRVKCI CPERVSPWDI ESLDPDGKKQ AVLPTSLKRT RPCSLQLDWP PTFVMDESQW  240
TSVAPKSQRQ PGVFQGDGGK RESRGPGDHW PPASIAPGCN PVKSLPAQDV MPANSTSWEA  300
RTTFETKDDN EKTLAQTNRF GKCKVFGVSL ADDTSELPSL QVSNSSELSS PSSVPPLSKS  360
SDFVQVIINE TSRGRPADLS PFKGYDKFIH GLDQLFYFGG NLIGRSSGWH VKCTDDNGDS  420
VPIRDYNREF VSMIHQGLIC PKEEEQGKQG AHLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-661204154356Auxin response factor 1
4ldw_A1e-661204154356Auxin response factor 1
4ldw_B1e-661204154356Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K03433.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018720535.10.0PREDICTED: auxin response factor 24
TrEMBLA0A059A8K90.0A0A059A8K9_EUCGR; Auxin response factor (Fragment)
STRINGXP_010039271.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157971016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.33e-65auxin response factor 2