PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.K03284.1.p | ||||||||
Common Name | EUGRSUZ_K03284 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 230aa MW: 25256.7 Da PI: 8.2211 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.8 | 6.4e-37 | 3 | 102 | 3 | 101 |
DUF260 3 aaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCk+lrrkCa+dCv+apyf eq p++fa++hk+FGasnv kll ++p er +a+ +++yeA+ar+rdPvyG+v++i++lqqq+ l+a+l Eucgr.K03284.1.p 3 GACKFLRRKCAADCVFAPYFRTEQgPARFAAIHKVFGASNVAKLLLHVPVAERCEAVFTIAYEAQARLRDPVYGCVSHIFALQQQVVYLQAQL 95 69******************999989******************************************************************* PP DUF260 95 allkeel 101 ++k++l Eucgr.K03284.1.p 96 MQVKAQL 102 9999875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.28 | 1 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.3E-36 | 3 | 99 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 230 aa Download sequence Send to blast |
RGGACKFLRR KCAADCVFAP YFRTEQGPAR FAAIHKVFGA SNVAKLLLHV PVAERCEAVF 60 TIAYEAQARL RDPVYGCVSH IFALQQQVVY LQAQLMQVKA QLAQNLMTNS INNSVAMPNP 120 HQQLGGDGSN NNMSGVQAFA ANHMMMMSNN SASPTSSLES IDHSNNSNNS NSAMMMVHRE 180 MESNRDDCYN YQELSFMLPP SSCTTKKRPP NCDLSELQAL AHTMMRNGS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-31 | 4 | 102 | 14 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-31 | 4 | 102 | 14 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00309 | DAP | Transfer from AT2G42430 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.K03284.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018720528.1 | 1e-170 | PREDICTED: LOB domain-containing protein 16 | ||||
Swissprot | Q9SLB7 | 5e-61 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A059A7K6 | 1e-170 | A0A059A7K6_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010039235.1 | 1e-169 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42430.1 | 5e-49 | lateral organ boundaries-domain 16 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.K03284.1.p |