PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K03256.1.p
Common NameEUGRSUZ_K03256, LOC104426568
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 284aa    MW: 31832.8 Da    PI: 6.5082
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K03256.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.12.1e-50101381129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrF P+deelv++yL +k++++++     + evd++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat sgyWkatgkd+ v+
  Eucgr.K03256.1.p  10 LPPGFRFYPSDEELVCHYLYRKIANEEVLK-GSLVEVDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGYRTNRATISGYWKATGKDRVVH 101
                       79************************9655.67***************88888999************************************* PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                       +  ++e+vg++ktLvfy++rap+g kt W+mhe+rle
  Eucgr.K03256.1.p 102 DPsTQEVVGMRKTLVFYQNRAPNGIKTGWIMHEFRLE 138
                       9877888***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-608156IPR003441NAC domain
PROSITE profilePS5100557.42410156IPR003441NAC domain
PfamPF023652.0E-2711137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGLRDIGATL PPGFRFYPSD EELVCHYLYR KIANEEVLKG SLVEVDLHTC EPWQLPEVAK  60
LNATEWYFFS FRDRKYATGY RTNRATISGY WKATGKDRVV HDPSTQEVVG MRKTLVFYQN  120
RAPNGIKTGW IMHEFRLESP HMPPKEDWVL CRVFYKSKED NAINTLPSPH YTFKEATAAS  180
SAPSANFDTS HYISSPNQAF SCGMMTYPQV ASLSSTSSSL LSHKPHSTPN LPHQSKGAST  240
KLIDDGYGFM WDMNFGDNSL VGDALPSNLD DMSIDMDGGS VFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-47915716166NO APICAL MERISTEM PROTEIN
1ut4_B1e-47915716166NO APICAL MERISTEM PROTEIN
1ut7_A1e-47915716166NO APICAL MERISTEM PROTEIN
1ut7_B1e-47915716166NO APICAL MERISTEM PROTEIN
4dul_A1e-47915716166NAC domain-containing protein 19
4dul_B1e-47915716166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K03256.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037974.10.0PREDICTED: NAC domain-containing protein 21/22
SwissprotQ84TE63e-62NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A059A8S30.0A0A059A8S3_EUCGR; Uncharacterized protein
STRINGXP_010037974.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-93NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]