PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K03144.1.p
Common NameEUGRSUZ_K03144, LOC104426476
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Dof
Protein Properties Length: 364aa    MW: 37817.8 Da    PI: 9.6684
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K03144.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.24.2e-3979138362
            zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                       e+alkcprCds+ntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  Eucgr.K03144.1.p  79 EAALKCPRCDSANTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 138
                       7789*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-3162127IPR003851Zinc finger, Dof-type
PfamPF027018.2E-3381136IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.62782136IPR003851Zinc finger, Dof-type
PROSITE patternPS01361084120IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MVFSSLPAYL DPSNWQQQQN HHHHQAGNSG LNNQLPPAPP PPPPPPPQPH GGAGGNPGGS  60
IRPGSMVERA RLANIPMPEA ALKCPRCDSA NTKFCYFNNY SLSQPRHFCK TCRRYWTRGG  120
ALRNVPVGGG CRRNKRSKGS SSKSPITSGS SDQQASGGSV SSITSRGSSG LAGDILNRAT  180
AQIPGLRYMS PSSLNNLGEL GNSGEMGLNY GGIPGSMVGD AGNLSFQLGG NSSLLSMGSL  240
EHQWRLHQVT QQFPFMSSLD KHANLYSMDA STSGVEPSGL AGHHQVRPNL FMNSGASHTS  300
SVKVENINQD QLNLSRQLMG NSGANDQFWS VGGGSGGGGV GGGGGSAWTD LSGFSSSSTS  360
SAL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00295DAPTransfer from AT2G37590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K03144.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037844.10.0PREDICTED: dof zinc finger protein DOF2.4
TrEMBLA0A059A7100.0A0A059A710_EUCGR; Uncharacterized protein
STRINGXP_010037844.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.19e-40DNA binding with one finger 2.4