PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K03122.1.p
Common NameEUGRSUZ_K03122
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 609aa    MW: 69823.4 Da    PI: 9.1579
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K03122.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3435.1e-1052506092364
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       ++lL++cA+av+s+d++ a+alL++++++asp g+ +qRla+yf+++L+arla+++s++y+ l  ++t+    ++ l++++l+  ++P+ + s
  Eucgr.K03122.1.p 250 RTLLIQCAQAVASNDHRSANALLNEIRKHASPFGNGTQRLAHYFANGLEARLAGTGSQIYRGLINRKTT---AADMLNSYQLYLAACPFQRYS 339
                       689************************************************************999998...8******************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                         +    Il+ v+ + ++H+iDf+i +G+ WpaL+q L++Rp + p+lRiTg++ p++g   +e+++etg+rLa++Ae+++vpfe+n+ +akr
  Eucgr.K03122.1.p 340 DAVPIFSILDTVADKMKIHVIDFGILYGFRWPALIQRLSQRPCP-PKLRITGIDFPQPGfrPAERVKETGQRLANYAESFNVPFEYNA-IAKR 430
                       *****************************************876.9************9*****************************.7*** PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                       +e +eleeL+++++E+++Vn++++ ++l+de+ + es rd vL+l+++ +P+++++   +  hn++ Fl+rf eal+++s+lfd+l++ +p e
  Eucgr.K03122.1.p 431 WEFIELEELKIDRDEVTIVNCMFRFKNLFDETIAEESSRDIVLNLIRRAQPDLFIHGVINGTHNAPFFLTRFREALHHFSSLFDMLDTIVPGE 523
                       ********************************************************************************************* PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                       ++er+ +E+ +lgre+ n +aceg er+er e++++W+ r ++aGF +vpls ++a  +   ++  + + + v+e  ++l+lgWk+
  Eucgr.K03122.1.p 524 NQERMLIEKDMLGREALNTIACEGWERVERPESYKQWQLRNMRAGFVQVPLSRRVARFVINNIALRYHKDFVVDEVGKWLLLGWKG 609
                       ******************************************************9998887777777677**************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.431223599IPR005202Transcription factor GRAS
PfamPF035141.8E-102250609IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MEEDIEEKTC MLQDSSDPLS AEKSFYEFLG KKYPPSPEPS RTNCITYNDK RSNDSLLDST  60
RYTSTIGSRK TGYYANIGRV QNPSNYVAMS FEKDIRPAGF QPNRGGNAQR LDLWDESQFV  120
RQFRMGIEES SKFLPNQAPT ELLPLKSNRK IDKRDRLGAS ERKESLHREE GNTEERSSKQ  180
AFVHEESVLR SDAFDVVLLS GQGEGLARLM NLRASLKNGV NEIEHKIQEP KAGRGRGKKR  240
RGKVEVVDVR TLLIQCAQAV ASNDHRSANA LLNEIRKHAS PFGNGTQRLA HYFANGLEAR  300
LAGTGSQIYR GLINRKTTAA DMLNSYQLYL AACPFQRYSD AVPIFSILDT VADKMKIHVI  360
DFGILYGFRW PALIQRLSQR PCPPKLRITG IDFPQPGFRP AERVKETGQR LANYAESFNV  420
PFEYNAIAKR WEFIELEELK IDRDEVTIVN CMFRFKNLFD ETIAEESSRD IVLNLIRRAQ  480
PDLFIHGVIN GTHNAPFFLT RFREALHHFS SLFDMLDTIV PGENQERMLI EKDMLGREAL  540
NTIACEGWER VERPESYKQW QLRNMRAGFV QVPLSRRVAR FVINNIALRY HKDFVVDEVG  600
KWLLLGWKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4325560825368Protein SCARECROW
5b3h_A2e-4325560824367Protein SCARECROW
5b3h_D2e-4325560824367Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237242KKRRGK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K03122.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039208.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A059A6Y90.0A0A059A6Y9_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010039208.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein