PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K03119.1.p
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 656aa    MW: 75465.7 Da    PI: 8.3791
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K03119.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.32.4e-1092846532374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       ++lL++cA+av+s+d++ a+alL++++++asp g+ +qRla+yf+++L+arla+++s++y+ l+ ++t+    +++l+a++l+  ++P+ + s
  Eucgr.K03119.1.p 284 RTLLIQCAQAVASNDHRSANALLNEIRKHASPFGNGTQRLAHYFANGLEARLAGTGSQIYRGLANRKTT---AADKLNAYHLYLAACPFQRYS 373
                       689************************************************************999999...9******************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                         +  +++ + v+ + r+HiiDf+i +G+ Wp+L+q L++Rp +  +lRiTg++ p++g   +++++etg+rLa++Ae+++vpfe+n+ +akr
  Eucgr.K03119.1.p 374 TTVSRRMVIDTVADKMRIHIIDFGILYGFRWPSLIQRLSQRPCP-TKLRITGIDLPQPGfrPAQRIKETGRRLANYAESFNVPFEYNA-IAKR 464
                       *****************************************876.79***********9*****************************.7*** PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                       +e +eleeL+++++E+++Vn++++ ++l+de+ + es+rd vL+l+++ +P+++++   + ++n++ F++rf eal+++s+lfd+l++ +p e
  Eucgr.K03119.1.p 465 WEFIELEELKIDRDEVTIVNCMFRFENLFDETIAEESPRDIVLNLIRRAQPDLFIHGVINGNYNAPFFVTRFREALHHFSSLFDMLDTIIPCE 557
                       ********************************************************************************************* PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa.klllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       ++er+ +E++ l+re+ n +aceg er+er e++++W+ r ++aGF +vpls + a+ + + + ++++ + + v+e  ++l++gWk+r L+++
  Eucgr.K03119.1.p 558 NQERMLIEKVTLEREALNTIACEGWERVERPESYKQWQLRNMRAGFVQVPLSRRLAQFVfNQMASRYH-KDFVVDEVGKWLLIGWKGRFLYAF 649
                       ****************************************************9977766155556666.55********************** PP

              GRAS 371 SaWr 374
                       S W+
  Eucgr.K03119.1.p 650 STWK 653
                       ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.441257633IPR005202Transcription factor GRAS
PfamPF035148.1E-107284653IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MHHLVDVAPF SNECRDAPDT KETEFSDAVF EYISRIRMEE DKEEKTCTLQ DSLDLLSAEK  60
SFYEVLGKKY PPSPEPSRTN CITYNDKDSN DSLLDGTRYT STIGSRKTGS YANIGRVENP  120
GNYGTMSFER DISPAAFQPN RGGNAERLDL CSESRIVRQF RMGVEESSKF LPNQATTELL  180
YQEPHRKIDK VDRLGALKRK ESLYREEGNM EERSSKQAFV HEESVLRSDA FDVILLNSQG  240
EGLAHLMNLR ASLKHRENEI AHKIEEPKGR GKKKRGKVEV VDVRTLLIQC AQAVASNDHR  300
SANALLNEIR KHASPFGNGT QRLAHYFANG LEARLAGTGS QIYRGLANRK TTAADKLNAY  360
HLYLAACPFQ RYSTTVSRRM VIDTVADKMR IHIIDFGILY GFRWPSLIQR LSQRPCPTKL  420
RITGIDLPQP GFRPAQRIKE TGRRLANYAE SFNVPFEYNA IAKRWEFIEL EELKIDRDEV  480
TIVNCMFRFE NLFDETIAEE SPRDIVLNLI RRAQPDLFIH GVINGNYNAP FFVTRFREAL  540
HHFSSLFDML DTIIPCENQE RMLIEKVTLE REALNTIACE GWERVERPES YKQWQLRNMR  600
AGFVQVPLSR RLAQFVFNQM ASRYHKDFVV DEVGKWLLIG WKGRFLYAFS TWKPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-422876538375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K03119.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039205.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A059A7780.0A0A059A778_EUCGR; Uncharacterized protein
STRINGXP_010039205.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein