PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K03117.1.p
Common NameEUGRSUZ_K03117
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 659aa    MW: 75711.8 Da    PI: 6.9822
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K03117.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3597.1e-1102876562374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       + lL++cA+av+s+d++ ++alL++++++asp g+ +qRla+yf+++L+arla+++s++y+ l  ++t+    ++ l+a++l+  ++P+ + s
  Eucgr.K03117.1.p 287 RMLLIRCAQAVASNDHRSTNALLNEIRKHASPFGNGTQRLAHYFANGLEARLAGTGSQIYRGLVNRKTT---AADMLNAYHLYLAACPFQRYS 376
                       569************************************************************999999...9******************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                       +++    Il+ v+ e r+HiiDf+i +G+ Wp+L+q L++Rp + p+lRiTg++ p++g   +e+++etg+rLa++A +++vpfe+n+ +akr
  Eucgr.K03117.1.p 377 NVVSITSILDTVADEMRIHIIDFGILYGFRWPTLIQRLSQRPCP-PKLRITGIDLPQPGfrPAERVKETGQRLANYAGSFNVPFEYNA-IAKR 467
                       *****************************************876.9************9*****************************.7*** PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                       +e +eleeL+++++E+++Vn++++ ++l+de+ + es+rd vL+l+++ +P+++++   + ++n++ F++rf eal+++s+lfd+l++ +p+e
  Eucgr.K03117.1.p 468 WEFIELEELKIDRDEVTIVNCMFRFENLFDETIAEESPRDIVLNLIRRAQPDLFIHGVVNGNYNAPFFVTRFREALHHFSSLFDMLDNIIPHE 560
                       ********************************************************************************************* PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa.klllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       +eer+ +E++ l+re+ n +aceg er+er e++++W+ r ++aGF +vpls + a+ + + + ++++ + + v+e  ++l++gWk+r L+++
  Eucgr.K03117.1.p 561 NEERMLIEKVTLEREALNTIACEGWERVERPESYKQWQLRNMRAGFVQVPLSRRLAQFVfNQMASRYH-KDFVVDEVGKWLLIGWKGRFLYAF 652
                       ****************************************************9977766155556666.55********************** PP

              GRAS 371 SaWr 374
                       S W+
  Eucgr.K03117.1.p 653 STWK 656
                       ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.554260636IPR005202Transcription factor GRAS
PfamPF035142.4E-107287656IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MHHLVDVAPF SNECHDAPDT EETEFSDAVF EYISRILMEE DIEEKTCMLQ DSLDLLSAEK  60
SFYEVLGQKY PPSPEPSRTN CITYNDKQSN DSLLDSTRYT STVSSRKTGH YANVRQVENP  120
SNYGTLSFEK DISPAAFKPN RGGNAQRLDL CGENQFVRQF RMGVEESSKF LPNQATTELL  180
HQEPHGKIDK VDRLGAWKRK ESLHREEGNM EERSTKQAFV HEESILRSDA FDVVLLNSQG  240
EGLAHLMNLR ASLKHRENEI AHKIEEPKGG RGRGKKKRGK VEVVDVRMLL IRCAQAVASN  300
DHRSTNALLN EIRKHASPFG NGTQRLAHYF ANGLEARLAG TGSQIYRGLV NRKTTAADML  360
NAYHLYLAAC PFQRYSNVVS ITSILDTVAD EMRIHIIDFG ILYGFRWPTL IQRLSQRPCP  420
PKLRITGIDL PQPGFRPAER VKETGQRLAN YAGSFNVPFE YNAIAKRWEF IELEELKIDR  480
DEVTIVNCMF RFENLFDETI AEESPRDIVL NLIRRAQPDL FIHGVVNGNY NAPFFVTRFR  540
EALHHFSSLF DMLDNIIPHE NEERMLIEKV TLEREALNTI ACEGWERVER PESYKQWQLR  600
NMRAGFVQVP LSRRLAQFVF NQMASRYHKD FVVDEVGKWL LIGWKGRFLY AFSTWKPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4329265725380Protein SCARECROW
5b3h_A9e-4429265724379Protein SCARECROW
5b3h_D9e-4429265724379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K03117.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039203.20.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A059A7780.0A0A059A778_EUCGR; Uncharacterized protein
STRINGXP_010039203.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein