PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K02907.1.p
Common NameEUGRSUZ_K02907, LOC104427829
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 318aa    MW: 35541.5 Da    PI: 6.7419
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K02907.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding475.8e-1564105346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +T++E+el+++++   G++ W+ Ia+ ++ gRt++++k++w++
  Eucgr.K02907.1.p  64 VFTPQEEELIIRLHVIIGSR-WSIIAQQLP-GRTDNDVKNHWNT 105
                       69******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.596856IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.3E-91463IPR009057Homeodomain-like
SuperFamilySSF466894.4E-2142115IPR009057Homeodomain-like
PROSITE profilePS5129421.17557111IPR017930Myb domain
SMARTSM007171.7E-1361109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2164112IPR009057Homeodomain-like
PfamPF002493.0E-1364105IPR001005SANT/Myb domain
CDDcd001674.73E-1065107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MRPPCTDKTN NRRGPWATEE DPRTIVQGTG NWGLAPRKAG LRRCGKSCKP RWSNYHQPDS  60
KHEVFTPQEE ELIIRLHVII GSRWSIIAQQ LPGRTDNDVK NHWNTKLRKK LKEMGIDPVT  120
HKPFSQVLRD YGNIDGTTRE SQIGSMDPPQ AFSDLNTHQT PPNVTSRTDT DTAQNNHSLD  180
LLAQLHAIKL VTEASTCSAH GKATFMPLNT SSLPPTSSSS TRSAALQSFR WSDFLIEDPT  240
LPAELSKEGI RMRPQSEIKN EGREEGNETG GFHQNGTSNG HKGSSIPSSD GSFVESILNQ  300
NEEMFMEFPE LWEEPLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-21131117108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K02907.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039154.10.0PREDICTED: transcription factor MYB35
TrEMBLA0A059A6K00.0A0A059A6K0_EUCGR; Uncharacterized protein
STRINGXP_010039154.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.12e-57MYB family protein