PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K02760.1.p
Common NameEUGRSUZ_K02760, LOC104426198
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 501aa    MW: 55633.5 Da    PI: 6.1422
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K02760.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.11.8e-1932121199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       ffkv++ s  +   +l++p kfa +++g+   ++ ++led+ gr+Wev+l  +k +g++ +++GW+ F +++gL++g f++F++ g s f  +
  Eucgr.K02760.1.p  32 FFKVMIGSQFS--ELLYIPPKFAPTISGQ--LNQNIRLEDSGGRQWEVTL--SKVDGSFAFQRGWNAFSRDHGLEVGYFLLFYYLG-SHF--R 115
                       88999555555..569**********888..5668***************..********************************99.788..8 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v ++++
  Eucgr.K02760.1.p 116 VDIYDR 121
                       888876 PP
2B336.58.9e-124224851885
                       --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                       lp +f++  +  ++  k + l+d+s r+W v +    + g   lt+GW +F +ang++ gD +vF+l+
  Eucgr.K02760.1.p 422 LPSSFFKGSS--SRDRKVVFLTDPSKRTWPVLY--HERLGVRSLTSGWDGFRQANGIQRGDDCVFQLQ 485
                       6777775443..446678999************..88888888***********************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-2325124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-2326124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.11230122IPR003340B3 DNA binding domain
CDDcd100172.28E-2131120No hitNo description
PfamPF023626.4E-1732121IPR003340B3 DNA binding domain
SMARTSM010192.2E-1132122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-13401490IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0095404497IPR003340B3 DNA binding domain
PROSITE profilePS5086312.111405500IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-13406485IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-10422500No hitNo description
PfamPF023623.4E-9422485IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MGCKMEACAE CSRNCVILHG KNKNASPNVS SFFKVMIGSQ FSELLYIPPK FAPTISGQLN  60
QNIRLEDSGG RQWEVTLSKV DGSFAFQRGW NAFSRDHGLE VGYFLLFYYL GSHFRVDIYD  120
RTGCRKVDFP ENWTSKKRSR SSRNSSDDPT GEKSSSESAS VVSGASAELD QCNRGTNVEE  180
AVKQMASVCL KSGGKSQPLS KMVFAEELSF MMDRHIENRE GEEVRPAFDL FDFEMKNNKT  240
CAGGNPYTVD GTGPSSVGAV LSQLCQDEAG LADKDPILDS VNNRTCEETD QNIKKLENSG  300
NLVGLDKQET LMNNCKNEVL PDVKRELMEM DEDNNCEVER PRVIKQEQVE MTPGHWSTKM  360
ANLEIYGKKP IVKAEYTASD GQLAKGEAIN AKASSVHMAA NTSYSVKVVT DCHSYLELPA  420
DLPSSFFKGS SSRDRKVVFL TDPSKRTWPV LYHERLGVRS LTSGWDGFRQ ANGIQRGDDC  480
VFQLQILSNS QSLYKVSITR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K02760.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037470.10.0PREDICTED: B3 domain-containing protein Os01g0905400
TrEMBLA0A059A5R60.0A0A059A5R6_EUCGR; Uncharacterized protein
STRINGXP_010037470.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1853758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-15B3 family protein