PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.K02714.2.p | ||||||||
Common Name | EUGRSUZ_K02714, LOC104426152 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 235aa MW: 25491.9 Da PI: 4.8481 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 177.9 | 9.3e-56 | 45 | 149 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ql++fw+ q ie+a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifd Eucgr.K02714.2.p 45 QLQMFWSIQrqeIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFD 137 89****9888889******************************************************************************** PP NF-YC 91 flvdivprdelk 102 flvdivprdelk Eucgr.K02714.2.p 138 FLVDIVPRDELK 149 *********975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.51E-34 | 14 | 139 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.7E-37 | 59 | 131 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.2E-21 | 67 | 130 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 235 aa Download sequence Send to blast |
MDNAQQQPQP NSYPPPPPPQ AVASGGPGAP PATPFHHLLQ QQQQQLQMFW SIQRQEIEQA 60 NDFKNHQLPL ARIKKIMKAD EDVRMISAEA PVLFAKACEL FILELTIRSW LHAEENKRRT 120 LQKNDIAAAI TRTDIFDFLV DIVPRDELKD EAAGLGAAAA MVGPPASGVP YYYPPMGQPA 180 APGMMIGRPA LDPAGGVYVQ QPPPPSQAWQ SVWQTAAPDD GAYGKPGDLD GPGY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-55 | 53 | 145 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 117 | 123 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.K02714.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-122 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010037409.1 | 1e-170 | PREDICTED: nuclear transcription factor Y subunit C-1 isoform X2 | ||||
Swissprot | Q9SMP0 | 1e-101 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A059A6X6 | 1e-168 | A0A059A6X6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010037408.1 | 1e-168 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G48590.1 | 7e-71 | nuclear factor Y, subunit C1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.K02714.2.p |
Entrez Gene | 104426152 |
Publications ? help Back to Top | |||
---|---|---|---|
|