PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K02708.1.p
Common NameEUGRSUZ_K02708, LOC104426143
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SBP
Protein Properties Length: 364aa    MW: 39805 Da    PI: 8.7982
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K02708.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.66.4e-4291167278
                       -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       C v+gC+adls+++eyhrrhkvCevhsk+p+v+++g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  Eucgr.K02708.1.p  91 CLVDGCNADLSNCREYHRRHKVCEVHSKTPEVTINGRKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 167
                       **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.4E-3484152IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.40288165IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.01E-3989170IPR004333Transcription factor, SBP-box
PfamPF031102.5E-3191164IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDWNLKAPWD LTEFGQETLP GSHGADGPNS YGIPSAKGEF SVDLKLGQMS NTVNEPVNMW  60
KDSGVSKMAS SPSGSSKRAR SASSGGQAVH CLVDGCNADL SNCREYHRRH KVCEVHSKTP  120
EVTINGRKQR FCQQCSRFHS LEEFDEGKRS CRKRLDGHNR RRRKPQPDPL SRSADIFSSF  180
RGPQLVPLSN SQVYPTTAVG NPTWAGVVNP EQEAALYARH QHLYGSSSSI YGGGKQIKFL  240
QGNNPVLSSQ MSAESSVCQQ LPRTIVSSDS GGLGRNMFYD RLVSESDCAL SLLSSPQMQT  300
SGTNFSHLAH QNSHRGNHSS EPLDSVRISS GSGRNTNSQG LFHLGSEGRQ RNEASQVIPF  360
HWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-29911641184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147164KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K02708.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037393.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_010037395.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_010037396.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_010037397.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_010037398.10.0PREDICTED: squamosa promoter-binding-like protein 13A
TrEMBLA0A059A6W50.0A0A059A6W5_EUCGR; Uncharacterized protein
STRINGXP_010037393.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41112759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-63SBP family protein