PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K02654.1.p
Common NameEUGRSUZ_K02654, LOC104426101
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TCP
Protein Properties Length: 368aa    MW: 42209.2 Da    PI: 8.6428
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K02654.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.82.6e-401152563133
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssaseceaesssssasnsssg... 88 
                        kkdrhski T++g+RdRR+Rls+e+a++fF Lqd+LG+dk+skti WLl ++ paike ++     +   ++e+ + +s+ s s+ +     
  Eucgr.K02654.1.p 115 SKKDRHSKINTAQGMRDRRMRLSVEVAREFFNLQDMLGLDKASKTIKWLLVKSTPAIKEVARGlqktK---NRESIPIMSVPSRSEREMMpei 204
                       69***********************************************************9964331...2233333444444422222444 PP

               TCP  89 .......kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                              ++++ a+k+k +q++++ ++   +esrakar+ra++rtrekm+++
  Eucgr.K02654.1.p 205 griakdnQQETIAKKRKVKQSRKTVFRPTGRESRAKARERAKQRTREKMMLQ 256
                       5666654444444466666666666788888******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.2E-39115254IPR005333Transcription factor, TCP
PROSITE profilePS5136932.94116174IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.444235252IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MFHSNHSTID LISSSERPIL QYPIFHDISF DSRQEDLPFS LYSLPSPSIF NDDENEDGAS  60
LQIHHDLLLQ GQQPLNPHHQ MTDLMTFSAG DSIGHNTGVK PEATAEQVVP TERSSKKDRH  120
SKINTAQGMR DRRMRLSVEV AREFFNLQDM LGLDKASKTI KWLLVKSTPA IKEVARGLQK  180
TKNRESIPIM SVPSRSEREM MPEIGRIAKD NQQETIAKKR KVKQSRKTVF RPTGRESRAK  240
ARERAKQRTR EKMMLQGLNR GDRPCKEWTE SDMNDRLPSN CSIGTSEDSG NRGSGIEVPN  300
MDVQVQFEGE SSYDQKRYYS ERNERVADNA SEVHNFNHPQ STRVEHPFTE FELLFKPWEA  360
YTGQYTR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K02654.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7725033e-74JQ772503.1 Actinodium cunninghamii cycloidea-like protein 1b (CYC1B) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037348.10.0PREDICTED: transcription factor CYCLOIDEA
RefseqXP_018720591.10.0PREDICTED: transcription factor CYCLOIDEA
RefseqXP_018720592.10.0PREDICTED: transcription factor CYCLOIDEA
TrEMBLA0A059A6S20.0A0A059A6S2_EUCGR; Uncharacterized protein
STRINGXP_010037346.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.24e-26TCP family protein