PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.K02545.1.p | ||||||||
Common Name | EUGRSUZ_K02545, LOC104426034 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | SBP | ||||||||
Protein Properties | Length: 552aa MW: 59583.3 Da PI: 7.295 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.9 | 1.9e-40 | 177 | 252 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rL+ hnerrrk++ Eucgr.K02545.1.p 177 CQVFGCNKDLSSSKDYHKRHKVCEVHSKTAQVVVNGVEQRFCQQCSRFHLLAEFDDGKRSCRKRLSVHNERRRKPH 252 **************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.0E-31 | 173 | 238 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.795 | 174 | 251 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.79E-37 | 175 | 254 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.9E-31 | 177 | 250 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 552 aa Download sequence Send to blast |
MESWSYFSEG KALVSDEPVS PFDLLGRSKN AVANWELRSP PSFGNSVVVS GQEAEVGQGF 60 GQLGFQEIIR KQVHPKSPRH VLTDKFDDGN GANQILAALD SFGGEDESTS NLSVSGVDSN 120 TQDSLLIDLK LGRFGESREV PGAKFPQGGK KVLSSSESST PPKRARSVGA NCHTHYCQVF 180 GCNKDLSSSK DYHKRHKVCE VHSKTAQVVV NGVEQRFCQQ CSRFHLLAEF DDGKRSCRKR 240 LSVHNERRRK PHVGVQSGSV GRMLQSYNGS GLERNLLAPT SFLCQDTLAG EKFLNSGPYG 300 MNNWYEHIKA EDGIGLGPPS AIPTPNRHPN AISLISPYKF ERQFALFDGG RVKSTASGIS 360 SKNNQVPREL GGQNSSHSSF QNTSFGSEDF AVFDTASTVQ GISGIIESGR ALSLLSSLSQ 420 NSSSHSRIPM AQSLVMAGTD YHFSLCGATD KLVDMSSHAS VGVELKKLSS SVMDSAERNL 480 PGHPLVSDLE ISDGILGGSG FVNSKDNLSP EGGATTMNLL QLSSQLQRVE DQRQSIHLKE 540 QNDVFGCHSI T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-27 | 177 | 250 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.K02545.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010037257.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 18 | ||||
TrEMBL | A0A059A5F6 | 0.0 | A0A059A5F6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010037257.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14770 | 9 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 2e-42 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.K02545.1.p |
Entrez Gene | 104426034 |