PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.K02480.1.p

Common Name

EUGRSUZ_K02480, LOC104425980

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Dof

Protein Properties

Length: 480aa MW: 51614.1 Da PI: 5.048

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.K02480.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	4.8e-39	144	203	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s++tkfCyynny+++qPr+fC+aC+ryWt+GG++rnvPvG+grrknk++ Eucgr.K02480.1.p 144 PDKIIPCPRCNSMDTKFCYYNNYNVNQPRHFCRACQRYWTAGGTMRNVPVGAGRRKNKNA 203 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	132	201	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.2E-32	146	202	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.63	148	202	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	150	186	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MQETQDPAIK LFGAKIPVSS AADGAALAAA KPEEREDGGG GGGGGGEEEY DEDEGGGGGE 60 EQEIEDAEQF QNASPEKASE NMQEDCEPPP NSQELDPSRT SPDAVNPMTP SIQEESTTSH 120 ITETGAQEEH GTPKNSQDKT LKKPDKIIPC PRCNSMDTKF CYYNNYNVNQ PRHFCRACQR 180 YWTAGGTMRN VPVGAGRRKN KNAATRYRPI TISEALQAAR VDSPNGAQLP HLRTNGAVLT 240 FGLDSPVCNS QSPIPNISEK KKVLNGYKNG FRDIENGDDS STSSSVTISN SMNEKGLNFP 300 QEQGMGNVNG FSTQIPCLPG VPWPYPWNST IPSPAFCPSG CPPMSFYPAA FWACGVLPNA 360 WNIPCMSPQS PFCNQKATTS GPNAPTLGKH SRESEPLKSD ISLEQAEPPR QKNGSILVPK 420 TLRIDDPSEA AKSSIWAALG IKAFEPKSRE GKVKDAETLP HLHANPAALS RSLNFHENT*

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MQETQDPAIK LFGAKIPVSS AADGAALAAA KPEEREDGGG GGGGGGEEEY DEDEGGGGGE  60
EQEIEDAEQF QNASPEKASE NMQEDCEPPP NSQELDPSRT SPDAVNPMTP SIQEESTTSH  120
ITETGAQEEH GTPKNSQDKT LKKPDKIIPC PRCNSMDTKF CYYNNYNVNQ PRHFCRACQR  180
YWTAGGTMRN VPVGAGRRKN KNAATRYRPI TISEALQAAR VDSPNGAQLP HLRTNGAVLT  240
FGLDSPVCNS QSPIPNISEK KKVLNGYKNG FRDIENGDDS STSSSVTISN SMNEKGLNFP  300
QEQGMGNVNG FSTQIPCLPG VPWPYPWNST IPSPAFCPSG CPPMSFYPAA FWACGVLPNA  360
WNIPCMSPQS PFCNQKATTS GPNAPTLGKH SRESEPLKSD ISLEQAEPPR QKNGSILVPK  420
TLRIDDPSEA AKSSIWAALG IKAFEPKSRE GKVKDAETLP HLHANPAALS RSLNFHENT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.K02480.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010037173.1	0.0	PREDICTED: cyclic dof factor 3 isoform X1
TrEMBL	A0A059A674	0.0	A0A059A674_EUCGR; Uncharacterized protein
STRING	XP_010037173.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-96	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Eucgr.K02480.1.p
Entrez Gene	104425980