PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K02284.1.p
Common NameEUGRSUZ_K02284
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-X1
Protein Properties Length: 926aa    MW: 100947 Da    PI: 7.6342
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K02284.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.64.1e-06161178118
          zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                       CG+H C+++CH GpC+pC
  Eucgr.K02284.1.p 161 CGRHWCGETCHVGPCDPC 178
                       ****************** PP
2zf-NF-X118.54.5e-06225242118
          zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                       CG+HkC ++CH+GpC++C
  Eucgr.K02284.1.p 225 CGNHKCHEICHPGPCGEC 242
                       ****************** PP
3zf-NF-X122.72.1e-07283300118
          zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                       CG+H+C+ +CH G+C pC
  Eucgr.K02284.1.p 283 CGIHRCKDKCHAGDCAPC 300
                       ****************** PP
4zf-NF-X1201.4e-06371390120
          zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                       CG+H+C+ lCH G CppC +
  Eucgr.K02284.1.p 371 CGQHSCEVLCHSGHCPPCLR 390
                       ******************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060082.20E-583144No hitNo description
SMARTSM004380.023106124IPR000967Zinc finger, NF-X1-type
PfamPF014226.8108123IPR000967Zinc finger, NF-X1-type
CDDcd060088.73E-10151199No hitNo description
PfamPF014220.0023161178IPR000967Zinc finger, NF-X1-type
SMARTSM004380.032161180IPR000967Zinc finger, NF-X1-type
CDDcd060081.20E-8215257No hitNo description
PfamPF014220.0013225242IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0025225244IPR000967Zinc finger, NF-X1-type
CDDcd060084.14E-12273321No hitNo description
PfamPF014229.3E-6283300IPR000967Zinc finger, NF-X1-type
SMARTSM004381.2E-4283302IPR000967Zinc finger, NF-X1-type
CDDcd060083.45E-5329382No hitNo description
PfamPF014223.7339350IPR000967Zinc finger, NF-X1-type
SMARTSM0043833339363IPR000967Zinc finger, NF-X1-type
CDDcd060087.29E-8361413No hitNo description
PfamPF014228.0E-5371388IPR000967Zinc finger, NF-X1-type
SMARTSM004383.9E-4371390IPR000967Zinc finger, NF-X1-type
CDDcd060081.63E-4418466No hitNo description
PfamPF0142246428445IPR000967Zinc finger, NF-X1-type
SMARTSM004380.025428446IPR000967Zinc finger, NF-X1-type
PfamPF014220.017482497IPR000967Zinc finger, NF-X1-type
SMARTSM004384.9482512IPR000967Zinc finger, NF-X1-type
PfamPF014221.3514541IPR000967Zinc finger, NF-X1-type
SMARTSM004380.032521542IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 926 aa     Download sequence    Send to blast
MIRRTAPIWS CPCCYSIFHL NCVRKWALAP TSSDLSVENC GVNWRCPGCQ KVQLMSSNEI  60
KYLCFCGKRT DPPSDFYLIP HSCGESCSKP LQSRASRVDE AEEDLCPHVC VLQCHPGPCP  120
PCKAFAPPQP CPCGKETITV RCSDRKSLLT CGQKCDKLLE CGRHWCGETC HVGPCDPCHA  180
LLDASCFCKR KVEVIPCGDM DLKGELEAEQ GVFSCGSTCG EELGCGNHKC HEICHPGPCG  240
ECELLPSRIK TCYCGKTNLP EERRSCLEPI PTCSETCDKA LRCGIHRCKD KCHAGDCAPC  300
LVPVIQRCRC GSTSRTVLCH KMMDEIFTCE KPCSRKKNCG RHRCSDRCCP QSSSDTNQHF  360
CTLVCDKKLR CGQHSCEVLC HSGHCPPCLR SIFTDLSCAC GRTSIPPPLP CGTPLPSCPH  420
PCSVVQPCGH APSHSCHFGD CPPCSVPVVK ECIGGHVVLR NIPCGSTNNI TCNNLCGKTR  480
RCGLHACGRT CHPAPCDVDT PDEAHHKASC GQVCGAPRRA CRHTCKAPCH PSSPCPDVRC  540
KFAVTIMCSC ARIKANVPCD AGGSDDNHVG EASLIQKLPP LQHLEASSGR VPLGQRKLMC  600
DDECARLERK RVLADAFNIV SPNLDALRLK ENFELVADLF RRDPKWVLSV EDRCKFLLYG  660
KSMGSTASLK VHVFRPMHKE KREALRLIAQ RWKLTIHEVG REQRCFTVIC VTPKSKAPAR  720
VLGVKGPMNA NALNPPTFDP LVDMDPRYVV SFFDLPRGSD ISALVLRFGG ECELLWLNDK  780
NAMAVFSDMT RAATAMRTLD HGSVYYGAVT FLRNGGSSAQ SFATNAWRGP AFANMGSSSW  840
KKVVVQEPGA ANDSLYDDEG WSVASATIKG KEAPSSASAT AQNISNAGSQ MELIGASDLE  900
EQHDVASHET NDMVDVVDDW ETAFA*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K02284.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036984.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
RefseqXP_018720962.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A059A3D60.0A0A059A3D6_EUCGR; Uncharacterized protein
STRINGXP_010036984.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1