PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K02225.1.p
Common NameEUGRSUZ_K02225
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 309aa    MW: 34677.7 Da    PI: 7.9488
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K02225.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1782.5e-5571321128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhP+deel+++yL++kv++k+++  ++i ++d++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkd+e++
  Eucgr.K02225.1.p   7 LPPGFRFHPSDEELITYYLTPKVSEKSFTS-KAIVDIDLNKCEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATRAGYWKTTGKDREIF 98 
                       79*************************999.88***************988999*************************************** PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +  g  vg+kktLvfykgrap+gek++Wvmheyrl
  Eucgr.K02225.1.p  99 R-AGLIVGMKKTLVFYKGRAPRGEKSNWVMHEYRL 132
                       *.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-635152IPR003441NAC domain
PROSITE profilePS5100559.6037152IPR003441NAC domain
PfamPF023651.0E-288132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEAENCLPPG FRFHPSDEEL ITYYLTPKVS EKSFTSKAIV DIDLNKCEPW DLPGKASMGE  60
KEWYFFSLRD RKYPTGLRTN RATRAGYWKT TGKDREIFRA GLIVGMKKTL VFYKGRAPRG  120
EKSNWVMHEY RLQSEHPYRS ADGWVVCRVF QKSVAAKKLQ TASSPPSPDS PNGEDTTADY  180
YGDQVETNNN SPSTIIATSG AFSNLPSGLA CNSYTSLNNN LNWPTTREPT SLLPPSWPSG  240
FPSLNSPWNT LLLKALQLRT FQPGEVTATM PNYSLPSHGT SPFAHDPSTN YRSDNSLEPF  300
EPGINQEQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-54715817171NO APICAL MERISTEM PROTEIN
1ut4_B8e-54715817171NO APICAL MERISTEM PROTEIN
1ut7_A8e-54715817171NO APICAL MERISTEM PROTEIN
1ut7_B8e-54715817171NO APICAL MERISTEM PROTEIN
3swm_A8e-54715820174NAC domain-containing protein 19
3swm_B8e-54715820174NAC domain-containing protein 19
3swm_C8e-54715820174NAC domain-containing protein 19
3swm_D8e-54715820174NAC domain-containing protein 19
3swp_A8e-54715820174NAC domain-containing protein 19
3swp_B8e-54715820174NAC domain-containing protein 19
3swp_C8e-54715820174NAC domain-containing protein 19
3swp_D8e-54715820174NAC domain-containing protein 19
4dul_A8e-54715817171NAC domain-containing protein 19
4dul_B8e-54715817171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K02225.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036890.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 2
RefseqXP_010036891.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 2
RefseqXP_010036892.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 2
TrEMBLA0A059A4F60.0A0A059A4F6_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010036890.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55272649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.13e-96NAC domain containing protein 58