PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.K02222.1.p | ||||||||
Common Name | EUGRSUZ_K02222 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 230aa MW: 24992.6 Da PI: 9.7118 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 89.8 | 3.4e-28 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C +dC+++p++ +q++++ +++k++G++ +l+ll + p + r+ +++sl+yeA+ r+ +P+yG+vg++++++++l+ Eucgr.K02222.1.p 4 SCNGCRVLRKACGDDCPIRPCLhwiktSPSQSNATLFLAKFYGRAGLLNLLLSGPAHLRPSIFKSLLYEACGRIVNPIYGSVGLLWSGSWHLC 96 6*********************9998766889************************************************************* PP DUF260 89 qlkaelallke 99 q++++++l+++ Eucgr.K02222.1.p 97 QAAVDAVLAGD 107 ****9998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.982 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.2E-23 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MKGSCNGCRV LRKACGDDCP IRPCLHWIKT SPSQSNATLF LAKFYGRAGL LNLLLSGPAH 60 LRPSIFKSLL YEACGRIVNP IYGSVGLLWS GSWHLCQAAV DAVLAGDPIA RVSSESAIGC 120 ATPPLEAGDI RHVPKTKPSA AHPDQLRKVR SRRRRFKRSR GSAADRELAE AEAGERAADG 180 DDSELELTLR LEPRRARRAS EEPQRDQITG VCDGDTRVLS SGLDVRRRL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.K02222.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010036886.1 | 1e-138 | PREDICTED: LOB domain-containing protein 40 | ||||
Swissprot | Q9M886 | 8e-67 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A059A369 | 1e-163 | A0A059A369_EUCGR; Uncharacterized protein | ||||
STRING | XP_010036886.1 | 1e-138 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8463 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 9e-68 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.K02222.1.p |