PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.K02205.1.p | ||||||||
Common Name | EUGRSUZ_K02205, LOC104425769 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 219aa MW: 24029.1 Da PI: 7.966 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 111.3 | 1.1e-34 | 16 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGf F+Ptdee++ eyL++k+ + +l++ ++i+e+ ++ +++PwdL +e+ yfFs+ + ++ + rat+ g+Wka+g k++ Eucgr.K02205.1.p 16 LPPGFVFEPTDEEILFEYLRRKIFALPLPA-SIIPELiNLSNLDPWDLL---GDGEQGRYFFSNLAGAN---NAVIRATSCGFWKAQGVPKQI 101 79****************************.6777777**********5...5678899****998875...57999**************** PP NAM 93 lsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ vg+kktLv+++gr p+g++t+Wvmheyrl Eucgr.K02205.1.p 102 SPSssdahNRMIVGMKKTLVYHRGRPPHGSRTSWVMHEYRL 142 987666655566***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.07E-41 | 9 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.138 | 16 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-21 | 17 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 219 aa Download sequence Send to blast |
MAKLNQIRAI GSMSKLPPGF VFEPTDEEIL FEYLRRKIFA LPLPASIIPE LINLSNLDPW 60 DLLGDGEQGR YFFSNLAGAN NAVIRATSCG FWKAQGVPKQ ISPSSSDAHN RMIVGMKKTL 120 VYHRGRPPHG SRTSWVMHEY RLVPSPSAAR GPQLNSWVSE LGRWVMCRVF VKTTSSSSSR 180 SDSTSMDVLS SSSSSSGSCL TEDSSSGDEE QTSEWFCS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-28 | 16 | 178 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-28 | 16 | 178 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-28 | 16 | 178 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-28 | 16 | 178 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-28 | 16 | 178 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-28 | 16 | 178 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-28 | 16 | 178 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-28 | 16 | 178 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-28 | 16 | 178 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-28 | 16 | 178 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-28 | 16 | 178 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-28 | 16 | 178 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-28 | 16 | 178 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-28 | 16 | 178 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.K02205.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010036866.1 | 1e-161 | PREDICTED: NAC domain-containing protein 83 | ||||
TrEMBL | A0A059A469 | 1e-159 | A0A059A469_EUCGR; Uncharacterized protein | ||||
STRING | XP_010036866.1 | 1e-160 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33480.1 | 6e-50 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.K02205.1.p |
Entrez Gene | 104425769 |