PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.K02197.1.p | ||||||||
Common Name | EUGRSUZ_K02197 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ARF | ||||||||
Protein Properties | Length: 672aa MW: 74818.3 Da PI: 8.3024 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.2 | 3.1e-18 | 7 | 71 | 33 | 99 |
-SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++l +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + +++el+v+v+r+ Eucgr.K02197.1.p 7 TQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGELRVGVRRA 71 358999*********************************************..449999*****996 PP | |||||||
2 | Auxin_resp | 113.2 | 2.4e-37 | 96 | 178 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr s++eF++++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt++g++d+dp W++ kWrsLk Eucgr.K02197.1.p 96 AWHAISTGTMFTVYYKPRISPAEFIIPYDQYMESLKKNYSIGMRFKMRFEGEEAPEQRFTGTIIGIEDADPKGWRDTKWRSLK 178 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 8.0E-4 | 1 | 72 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.478 | 1 | 72 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-25 | 2 | 85 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-20 | 2 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.58E-14 | 5 | 70 | No hit | No description |
Pfam | PF02362 | 7.3E-16 | 6 | 71 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.8E-34 | 96 | 178 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.6E-12 | 527 | 630 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.78E-11 | 545 | 622 | No hit | No description |
PROSITE profile | PS51745 | 24.51 | 545 | 629 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 672 aa Download sequence Send to blast |
MSKQPPTQEL AAKDLHGNEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE 60 NGELRVGVRR AMKQQGNVSP SVISSHSMHL GVLATAWHAI STGTMFTVYY KPRISPAEFI 120 IPYDQYMESL KKNYSIGMRF KMRFEGEEAP EQRFTGTIIG IEDADPKGWR DTKWRSLKVR 180 WDENSAIPRP ERVSPWNVEP ALAPLALNPL PVSRPKRPRS SILPSSPESS VLTREGYICK 240 VAADPSSSNG HSRILQGPES STLRGIATDN DFDVVEKSVM FTPSMEEEKI DMLSASKRHG 300 LDSWMTSGRR GPTCADLLSG FGGNTDVSHG FSLSSEQSSA ANPARKHLVD QGRKFHIIGN 360 SWSMIPSSLS LNLSESNRNS SLHGNDMHSP QGIGKYSGSK EYPVVHGQRV EQPHQNWVMR 420 PPMSPHFNFP HASESISKSP YAQQHEAIKA KGGNCKLFGI PLVSNPVMAK SAVSVRSATN 480 VFTDHVDSPS CQAHGFRLDQ PMEPLNAANG GDDLVANELE KEKLFQNSQP HNRDVHHRVQ 540 ASSTRSCTKV QKQGIALGRS VDLAKFSNYD ELRAELDQLF EFGGELMNPR SNWLIVYNDD 600 EGDMMLVGDD PWQEFCGIVR KIFIYTREEV QKMKPGTISA KDEDNLMVDE GVFSKKMTSD 660 TLPSASDPKN C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 2e-98 | 1 | 200 | 155 | 354 | Auxin response factor 1 |
4ldw_A | 2e-98 | 1 | 200 | 155 | 354 | Auxin response factor 1 |
4ldw_B | 2e-98 | 1 | 200 | 155 | 354 | Auxin response factor 1 |
4ldx_A | 2e-98 | 1 | 200 | 155 | 354 | Auxin response factor 1 |
4ldx_B | 2e-98 | 1 | 200 | 155 | 354 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.K02197.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018720464.1 | 0.0 | PREDICTED: auxin response factor 2 | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A059A455 | 0.0 | A0A059A455_EUCGR; Auxin response factor | ||||
STRING | XP_010039004.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5348 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.K02197.1.p |