PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.K01943.1.p | ||||||||
Common Name | EUGRSUZ_K01943, LOC104425581 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NF-YA | ||||||||
Protein Properties | Length: 202aa MW: 22235.6 Da PI: 8.4304 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.3 | 4.5e-32 | 111 | 167 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e e+k ksrkpylheSRh hAlrR+Rg+gGrF Eucgr.K01943.1.p 111 EEPVFVNAKQYHGILRRRQSRAKAELENKA-LKSRKPYLHESRHLHALRRARGCGGRF 167 69***************************9.9*************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.5E-35 | 109 | 170 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.399 | 110 | 170 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.5E-27 | 112 | 167 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.0E-23 | 113 | 135 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 115 | 135 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.0E-23 | 144 | 167 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MTSSVHDISE NGEADEQQKH SEQHESSPAT GVPHPGVSLP NVQYATPPQL GAGHAMTPPA 60 YPYPDPYYRS IFAPYDAQSY PQQPYGAQPM VHLQLMGIQQ AGVPLPSDAV EEPVFVNAKQ 120 YHGILRRRQS RAKAELENKA LKSRKPYLHE SRHLHALRRA RGCGGRFLNA KKDENQQSEV 180 SSADKSQGNI NLNSDKSDRS S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 5e-20 | 110 | 175 | 1 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.K01943.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010036606.1 | 1e-147 | PREDICTED: nuclear transcription factor Y subunit A-7 isoform X2 | ||||
Swissprot | Q84JP1 | 8e-69 | NFYA7_ARATH; Nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | A0A059A262 | 1e-146 | A0A059A262_EUCGR; Uncharacterized protein | ||||
STRING | XP_010036604.1 | 1e-139 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4168 | 27 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 3e-61 | nuclear factor Y, subunit A7 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.K01943.1.p |
Entrez Gene | 104425581 |
Publications ? help Back to Top | |||
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