PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.K01847.1.p | ||||||||
Common Name | EUGRSUZ_K01847, LOC104425500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 366aa MW: 40259.9 Da PI: 8.3155 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.9 | 1.5e-17 | 199 | 253 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Eucgr.K01847.1.p 199 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 253 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 126.7 | 1e-40 | 199 | 289 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E d+e+Lkr++++l+een+rL+ke +eLr +lk Eucgr.K01847.1.p 199 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEIDCEYLKRCCETLTEENRRLQKELQELR-ALK 289 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 1.3E-5 | 74 | 154 | IPR006712 | HD-ZIP protein, N-terminal |
SuperFamily | SSF46689 | 2.1E-18 | 191 | 256 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.86 | 195 | 255 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.5E-15 | 197 | 259 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.22E-15 | 199 | 256 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-17 | 199 | 253 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.8E-15 | 199 | 253 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 230 | 253 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 4.1E-10 | 255 | 289 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.1E-25 | 255 | 298 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MELALTLGDT SKPFSFLDKA PKMAGDKESG NRDLGFCMGL GVSGRSSRGG GDEEEDGDGD 60 KRESPATDRR HHQQHHPPST LLQLHLLPFS PTNPRNSHHS HKPSTSQFRL PWLTDHLGSE 120 PESSGGAGRG LDVNRFPAAE EAEQSSPNSA LSSFQMEFGI RSGGGAGFRS GSHKRVDMEG 180 DNERDCSRGS DDDDNGLTRK KLRLSKEQSA FLEESFKEHN TLNPKQKLAL AKQLNLRPRQ 240 VEVWFQNRRA RTKLKQTEID CEYLKRCCET LTEENRRLQK ELQELRALKT SQPFYMQLPA 300 TTLTMCPSCE RVATTTAPAS AASSPAAAAA APPLAKPKPR TYPFPHAPQL HHLPQAQPQA 360 HQAAS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 197 | 203 | TRKKLRL |
2 | 247 | 255 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.K01847.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010036498.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HOX11 | ||||
Swissprot | P46665 | 1e-97 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A059A1W8 | 0.0 | A0A059A1W8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010036498.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4928 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 3e-73 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.K01847.1.p |
Entrez Gene | 104425500 |