PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.K01541.1.p

Common Name

EUGRSUZ_K01541, LOC104425307

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Dof

Protein Properties

Length: 498aa MW: 53730.6 Da PI: 8.2109

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.K01541.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.8	1.1e-38	113	172	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCy+nny+++qPr+fC++C+ryWt+GG++rnvP+G+grrknk+ Eucgr.K01541.1.p 113 PDKILPCPRCNSLETKFCYFNNYNVNQPRHFCRNCQRYWTAGGTMRNVPIGAGRRKNKHL 172 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	101	170	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-31	115	171	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.537	117	171	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	119	155	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MVLALRARER DSADKMSGGG FVSENKDPGI KLFGRNIPVP DCRVPAGSAG GSRALSDSEV 60 THACSDIEKP ETVKYGHPHN SAVGGEKAMV MRNLQNGHAE TKYADQEKVF KKPDKILPCP 120 RCNSLETKFC YFNNYNVNQP RHFCRNCQRY WTAGGTMRNV PIGAGRRKNK HLASQYCQAT 180 LSSSSTLNTR LDIPEMTVNH QFMAPKEITS TTLGPSVGNA RVLKFGPEAS LSESVETVLS 240 LKDPKISIET GSINCVQTRE EVSSSGSSMT TYSIHDSTKS AAENEEIGIS GSRREQNSLD 300 PMHFYPVPAC FIPLNTGWQH LASFRTTQYS PEQVAGVASP NSVHLSSTPM LAVPGICPPS 360 IPLQIVPMAP YFGCMPLRPS GLSTTPSSGM NSGPSSSSPS SPMGNAYCSA SASPTLGKHS 420 RDANFADFER SDKCILVPKT LRMDNPSEAS KIPIWATLGI KPGKAKVENE LNDSDATHMM 480 EVNPAAFSRS QTFQEST*

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MVLALRARER DSADKMSGGG FVSENKDPGI KLFGRNIPVP DCRVPAGSAG GSRALSDSEV  60
THACSDIEKP ETVKYGHPHN SAVGGEKAMV MRNLQNGHAE TKYADQEKVF KKPDKILPCP  120
RCNSLETKFC YFNNYNVNQP RHFCRNCQRY WTAGGTMRNV PIGAGRRKNK HLASQYCQAT  180
LSSSSTLNTR LDIPEMTVNH QFMAPKEITS TTLGPSVGNA RVLKFGPEAS LSESVETVLS  240
LKDPKISIET GSINCVQTRE EVSSSGSSMT TYSIHDSTKS AAENEEIGIS GSRREQNSLD  300
PMHFYPVPAC FIPLNTGWQH LASFRTTQYS PEQVAGVASP NSVHLSSTPM LAVPGICPPS  360
IPLQIVPMAP YFGCMPLRPS GLSTTPSSGM NSGPSSSSPS SPMGNAYCSA SASPTLGKHS  420
RDANFADFER SDKCILVPKT LRMDNPSEAS KIPIWATLGI KPGKAKVENE LNDSDATHMM  480
EVNPAAFSRS QTFQEST*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.K01541.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010036266.1	0.0	PREDICTED: cyclic dof factor 3 isoform X1
TrEMBL	A0A059A1X6	0.0	A0A059A1X6_EUCGR; Uncharacterized protein
STRING	XP_010036266.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15591	10	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	2e-39	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Eucgr.K01541.1.p
Entrez Gene	104425307