PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.K01522.1.p | ||||||||
Common Name | EUGRSUZ_K01522 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 231aa MW: 24495.6 Da PI: 5.2195 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.3 | 3.1e-39 | 9 | 110 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC ++C++apyf ++q ++kfa+vh +FGasnv+kll ++p ++r+da+ +++yeA+ar+ dPvyG+v++il+lqqq+++l+a Eucgr.K01522.1.p 9 PCGACKFLRRKCIHGCIFAPYFGSDQgAAKFAAVHMVFGASNVSKLLLHIPVNKRQDAVVTITYEAQARLADPVYGCVSTILALQQQVATLQA 101 7***********************9989***************************************************************** PP DUF260 93 elallkeel 101 el+l++++l Eucgr.K01522.1.p 102 ELSLVQTQL 110 *****9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.961 | 8 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-38 | 9 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MTAPPPGAPC GACKFLRRKC IHGCIFAPYF GSDQGAAKFA AVHMVFGASN VSKLLLHIPV 60 NKRQDAVVTI TYEAQARLAD PVYGCVSTIL ALQQQVATLQ AELSLVQTQL MSTRYAVASA 120 FQAPEMQQPQ PAAHPCHLPM LQPEYFNNSS ATSNNNFINI SSFAAAAAAA AATNNFAAAA 180 AAASSHTLEP LPQFPHPPRD EDEGEDEAEE EEEGGSHVPA IFADEIFRGR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-39 | 2 | 116 | 4 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-39 | 2 | 116 | 4 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.K01522.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010036253.1 | 1e-168 | PREDICTED: LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 1e-72 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A059A0U5 | 1e-167 | A0A059A0U5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010036253.1 | 1e-168 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 2e-48 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.K01522.1.p |