PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.K01504.1.p | ||||||||
Common Name | EUGRSUZ_K01504 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 269aa MW: 30385.7 Da PI: 7.6653 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.3e-18 | 27 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde+l+ +vk+ G g+W+t +++ g+ R++k+c++rw +yl Eucgr.K01504.1.p 27 RGPWTPEEDEILASYVKKEGEGRWRTLPKRAGLMRCGKSCRLRWMNYL 74 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.4 | 4.6e-15 | 85 | 125 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Eucgr.K01504.1.p 85 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 125 89***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-23 | 18 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.538 | 22 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.8E-29 | 24 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.8E-13 | 26 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-16 | 27 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.90E-11 | 29 | 74 | No hit | No description |
PROSITE profile | PS51294 | 24.397 | 75 | 129 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-24 | 77 | 130 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 79 | 127 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.64E-11 | 85 | 125 | No hit | No description |
Pfam | PF00249 | 7.6E-14 | 85 | 125 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 269 aa Download sequence Send to blast |
MRNPSSSSSS NSPSKPTPCC SKVGIKRGPW TPEEDEILAS YVKKEGEGRW RTLPKRAGLM 60 RCGKSCRLRW MNYLRPSVKR GQIAPDEEDL ILRLHRLLGN RWSLIAGRIP GRTDNEIKNY 120 WNTHLSKKLI SQGIDPRTHK PLELIPNMPT SDDHDFAPAS ISPQNPTASE FQVTNGDHYQ 180 VAITDNTQDP KDVMTNLQDL HQNPRVDHQG GVNQNWQNLD GSAIRAGSSS HRSEAQTHAQ 240 FYMDNSNEDV FSSFLDSLIN EDGYTNQHQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 27 | 129 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.K01504.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010036229.1 | 0.0 | PREDICTED: transcription repressor MYB6 | ||||
TrEMBL | A0A059A237 | 0.0 | A0A059A237_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010036229.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13540.1 | 4e-77 | myb domain protein 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.K01504.1.p |