PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.K01476.2.p

Common Name

EUGRSUZ_K01476

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

G2-like

Protein Properties

Length: 418aa MW: 45757.5 Da PI: 7.481

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.K01476.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.2	4.3e-34	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerFveav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl Eucgr.K01476.2.p 46 KPRLKWTPDLHERFVEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.849	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.4E-32	44	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.84E-17	45	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.5E-23	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	6.5E-10	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	9.0E-21	148	191	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MYHHNQHLGK NISPPSRMPI PSDRHMFIQG GNGPGDSGLV LSTDAKPRLK WTPDLHERFV 60 EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQKYRL SKNLHGQANS GNNKIGTVAV 120 GGDRVPETNG SHVHNLNIVP QTNKNLPFSE ALQMQIEVQR RLHEQLERHL QLRIEAQGKY 180 LQSVLEKAQE TLGRQNVGSA SLEATKLQLS ELVSKVSTQS LNSAFPDLKE LQGLCAQQIQ 240 TNPPTDCSVD SCLTSCEGSH KDQEIHNNGI GLRPYSGGSV LLDPKGITDE PRTEKIEFKW 300 GGDLKEDRMF LSYGVKEMER SFPGGLGQGH LSMSIGLEGG LGCSEVKNKA KEVGGSVNFL 360 ERLHSRADSV NMDSNQRSCG NQLHYFEAKL DLNAREETDV ASSGKQFDLN GNGFGWG*

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MYHHNQHLGK NISPPSRMPI PSDRHMFIQG GNGPGDSGLV LSTDAKPRLK WTPDLHERFV  60
EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQKYRL SKNLHGQANS GNNKIGTVAV  120
GGDRVPETNG SHVHNLNIVP QTNKNLPFSE ALQMQIEVQR RLHEQLERHL QLRIEAQGKY  180
LQSVLEKAQE TLGRQNVGSA SLEATKLQLS ELVSKVSTQS LNSAFPDLKE LQGLCAQQIQ  240
TNPPTDCSVD SCLTSCEGSH KDQEIHNNGI GLRPYSGGSV LLDPKGITDE PRTEKIEFKW  300
GGDLKEDRMF LSYGVKEMER SFPGGLGQGH LSMSIGLEGG LGCSEVKNKA KEVGGSVNFL  360
ERLHSRADSV NMDSNQRSCG NQLHYFEAKL DLNAREETDV ASSGKQFDLN GNGFGWG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-21	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-21	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-21	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-21	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.K01476.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010036186.1	0.0	PREDICTED: myb-related protein 2 isoform X1
Swissprot	Q9SQQ9	1e-146	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A059A308	0.0	A0A059A308_EUCGR; Uncharacterized protein
STRING	XP_010036186.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-149	G2-like family protein

Link Out ? help Back to Top
Phytozome	Eucgr.K01476.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]