PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.K01472.1.p

Common Name

EUGRSUZ_K01472, LOC104425242

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 366aa MW: 40839.2 Da PI: 5.8634

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.K01472.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.4	7.7e-55	8	135	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdee++++yL+kkv + +++ +i e+d++k+ePwdLpkk++ +eke yfF ++d+ky+tg r+nrat+sgyWkatgkdke++ Eucgr.K01472.1.p 8 LPPGFRFHPTDEEIITHYLTKKVLNPNFNS-CAIGEADLNKSEPWDLPKKAHMGEKERYFFNQKDRKYPTGMRTNRATESGYWKATGKDKEIF 99 79***********************998.67***********999999*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129 + k++lvg+kktLvfykgrapkgekt+Wvmheyrle Eucgr.K01472.1.p 100 RGKSNLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 135 ********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-60	6	159	IPR003441	NAC domain
PROSITE profile	PS51005	56.83	8	159	IPR003441	NAC domain
Pfam	PF02365	2.3E-28	9	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MEDEIVELPP GFRFHPTDEE IITHYLTKKV LNPNFNSCAI GEADLNKSEP WDLPKKAHMG 60 EKERYFFNQK DRKYPTGMRT NRATESGYWK ATGKDKEIFR GKSNLVGMKK TLVFYKGRAP 120 KGEKTNWVMH EYRLEGKFSY YNLPKVSKDE WVVSRIFHKS TGIKKNESGL ISGPFPIDPS 180 GDDELPNPSP SPSLPPLMDD SYFARPISSF PKSENDFPDM TSASAPRSAE GNYGDEMNGF 240 HRFNPSNTNY QTDPSSSAFS SMFSGQLSFP ISPYDGIDNP DFFLGFGYGG SDNTQAIIRG 300 VAATQHETRG LEQTLIKGEQ FAMSNNKSVV SHSQDTGLST DANAETSSSA ISKHEAGNFS 360 DYLWE*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MEDEIVELPP GFRFHPTDEE IITHYLTKKV LNPNFNSCAI GEADLNKSEP WDLPKKAHMG  60
EKERYFFNQK DRKYPTGMRT NRATESGYWK ATGKDKEIFR GKSNLVGMKK TLVFYKGRAP  120
KGEKTNWVMH EYRLEGKFSY YNLPKVSKDE WVVSRIFHKS TGIKKNESGL ISGPFPIDPS  180
GDDELPNPSP SPSLPPLMDD SYFARPISSF PKSENDFPDM TSASAPRSAE GNYGDEMNGF  240
HRFNPSNTNY QTDPSSSAFS SMFSGQLSFP ISPYDGIDNP DFFLGFGYGG SDNTQAIIRG  300
VAATQHETRG LEQTLIKGEQ FAMSNNKSVV SHSQDTGLST DANAETSSSA ISKHEAGNFS  360
DYLWE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-50	6	165	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-50	6	165	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-50	6	165	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-50	6	165	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-50	6	165	18	174	NAC domain-containing protein 19
3swm_B	6e-50	6	165	18	174	NAC domain-containing protein 19
3swm_C	6e-50	6	165	18	174	NAC domain-containing protein 19
3swm_D	6e-50	6	165	18	174	NAC domain-containing protein 19
3swp_A	6e-50	6	165	18	174	NAC domain-containing protein 19
3swp_B	6e-50	6	165	18	174	NAC domain-containing protein 19
3swp_C	6e-50	6	165	18	174	NAC domain-containing protein 19
3swp_D	6e-50	6	165	18	174	NAC domain-containing protein 19
4dul_A	5e-50	6	165	15	171	NAC domain-containing protein 19
4dul_B	5e-50	6	165	15	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.K01472.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010036181.1	0.0	PREDICTED: NAC domain-containing protein 92
TrEMBL	A0A059A2Z7	0.0	A0A059A2Z7_EUCGR; Uncharacterized protein
STRING	XP_010036181.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2269	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	3e-96	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	Eucgr.K01472.1.p
Entrez Gene	104425242