PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K01387.2.p
Common NameEUGRSUZ_K01387, LOC104425198
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family CO-like
Protein Properties Length: 408aa    MW: 44401.4 Da    PI: 4.8946
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K01387.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box216.9e-07444539
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                      +C+ ++e++ + +C+++  +lC +C  + H+       H++
  Eucgr.K01387.2.p  4 ICDFCGEQRSTVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44
                      8*****************************65677777766 PP
2zf-B_box24.27e-084689441
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                        C++++++++   C++ ++ lC++C   +H g       H++++
  Eucgr.K01387.2.p 46 LLCERCNSQPALVRCTEERVSLCQNCDWIGH-GasttasgHKRQT 89
                      57*****************************.5578888888776 PP
3CCT62.81.1e-21350393144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       R +a++RYkeK+ktRkFeK++rYesRKa+A+ R RvKGrFvk+ 
  Eucgr.K01387.2.p 350 RSNAVMRYKEKKKTRKFEKTVRYESRKARADVRRRVKGRFVKAG 393
                       899**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.826147IPR000315B-box-type zinc finger
CDDcd000211.26E-8347No hitNo description
SMARTSM003361.6E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501199.24390IPR000315B-box-type zinc finger
CDDcd000211.51E-54790No hitNo description
SMARTSM003360.214890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.2350392IPR010402CCT domain
PfamPF062031.3E-16350392IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGFICDFCGE QRSTVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPALVRC  60
TEERVSLCQN CDWIGHGAST TASGHKRQTI NCYSGCPSSS ELSSIWSFVS DLPSIRESNC  120
EEGLGSMHIT ENSERTTWET LDNSTSLEAS SVLQANNVAD ALVGSSSLPE LKSVSQSLDQ  180
LALPVNTLNK VCYPMSNPGV CADDLYKELN MDEVDMNIED YEELFGLTLN NSEELFQNGG  240
LDSLFGTKDM SAADSNCQDD LLAEGSTVGR PSATQPACSV ASGDSIMSSK TEPILCFTSR  300
QAPSGISFSG LTGESSGADY QDCGASSMLL MREPPWCPPG AENSVPSTSR SNAVMRYKEK  360
KKTRKFEKTV RYESRKARAD VRRRVKGRFV KAGQAYDYDP LSPTRSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K01387.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036118.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
RefseqXP_018720770.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
RefseqXP_018720771.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
SwissprotQ9LUA91e-153COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A059A1F80.0A0A059A1F8_EUCGR; Uncharacterized protein
STRINGXP_010036118.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-135B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]