PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K01240.1.p
Common NameEUGRSUZ_K01240, LOC104425067
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARF
Protein Properties Length: 708aa    MW: 77911.1 Da    PI: 7.3255
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K01240.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.62.8e-24121222199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF+  +
  Eucgr.K01240.1.p 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysVDPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFM--R 209
                       89****************************985444444..8************************************************..4 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                        +++ l+v+++r+
  Eucgr.K01240.1.p 210 AENGDLCVGIRRA 222
                       488999****997 PP
2Auxin_resp1126e-37290373183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       aa+ a+++ +FevvY+Prast+eF+vk + v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+ Wp+S+Wr+L+
  Eucgr.K01240.1.p 290 AASLAANGHPFEVVYYPRASTPEFCVKSSLVKTAMQIRWCPGMRFKMAFETEDSSRISWfMGTISSVHVADPTCWPDSPWRLLQ 373
                       68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-37112227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-29115224IPR015300DNA-binding pseudobarrel domain
CDDcd100175.20E-21120221No hitNo description
PfamPF023623.0E-22121222IPR003340B3 DNA binding domain
SMARTSM010198.5E-22121223IPR003340B3 DNA binding domain
PROSITE profilePS5086313.084121223IPR003340B3 DNA binding domain
PfamPF065074.8E-32290373IPR010525Auxin response factor
PROSITE profilePS5174518.052620701IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MITFIDSKEK LKEVEKTLDS QLWHACAGGM VQMPPVNSKV FYFPQGHAEH SSGPVDFRSC  60
PRIPAYIPCR VSAIRFMADP ETDEVFAKMR LVPLTSSEPD FGDDGIGGLQ GSDGQDKPAS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSVDPPVQT ILAKDVHGET WKFRHIYRGT  180
PRRHLLTTGW STFVNHKKLV AGDSIVFMRA ENGDLCVGIR RAKRGIGSGP ESSSGWNPVG  240
GNCAVPYGGF SAFLTEDENK LITNGHGNCM SGNGSLMGKK RVTPEAVVEA ASLAANGHPF  300
EVVYYPRAST PEFCVKSSLV KTAMQIRWCP GMRFKMAFET EDSSRISWFM GTISSVHVAD  360
PTCWPDSPWR LLQVTWDEPD LLQNVKRVSP WLVELVSSMP AIHLSPFSPP RKKLRLPHHP  420
DFPLDGHFPM PSFSGDLLGP SSPFGCLPNS HSAAGMQGAR HAYYSQSLPD LHLSKQPSSL  480
FPAGFPLLDH SIRSMRTSNG PRMHKSSSDD DISTLLTMTN YGKVFKKLEE VKKPPQLVLF  540
GKPILTEQQI SLSNSATTTT TTASPVRTSS EEKIDKTGSF PDGPDSARQQ SGQREQQSSC  600
EQLRVHEDKH QQEMEACSEI GHCKVFIASE DVGRTLDLSL LASYDELCRK LTDMFGVENS  660
QSLARHVLYR DDKGAEKRIG DEPYSDFIRT ARRLTILTNS SSNGVGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-79339432388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K01240.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035948.10.0PREDICTED: auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A059A1B40.0A0A059A1B4_EUCGR; Auxin response factor
STRINGXP_010035948.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]