PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.K01228.2.p | ||||||||
Common Name | EUGRSUZ_K01228, LOC104425055 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 223aa MW: 25015.1 Da PI: 8.0013 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 85.3 | 1.2e-26 | 3 | 78 | 55 | 128 |
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 eke yfF+ r +ky+++ r+nr+t sg+Wkatg dk+++s ++ vglkktLv+y+g+a +g+ktdW+mhe+rl Eucgr.K01228.2.p 3 EKEGYFFCIRGRKYKNSIRPNRVTGSGFWKATGIDKPIYSGkyPHNCVGLKKTLVYYRGSAGRGTKTDWMMHEFRL 78 6789************************************7555566***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 33.532 | 1 | 109 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.36E-30 | 2 | 108 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-11 | 7 | 78 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MGEKEGYFFC IRGRKYKNSI RPNRVTGSGF WKATGIDKPI YSGKYPHNCV GLKKTLVYYR 60 GSAGRGTKTD WMMHEFRLPP VEKGGDLSDA NDTVTEEAEV WTLCRIFKRI ASSRKYIATT 120 ECKETTFKQS SINSCSKSSS FESEYGDQCL SFGSDHSAVQ PSDQKPATRH VEQAQLSWVN 180 HCHSIPQAPV ATPCLSLWNL NGDDIFANGI NWDELRSIVH EE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-27 | 1 | 115 | 71 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-27 | 1 | 115 | 71 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-27 | 1 | 115 | 71 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-27 | 1 | 115 | 71 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-27 | 1 | 115 | 71 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-27 | 1 | 115 | 71 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-27 | 1 | 115 | 71 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-27 | 1 | 115 | 71 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.K01228.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010035934.1 | 1e-168 | PREDICTED: transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A059A001 | 1e-166 | A0A059A001_EUCGR; Uncharacterized protein | ||||
TrEMBL | A0A059A0Z3 | 1e-167 | A0A059A0Z3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010035934.1 | 1e-167 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G43000.1 | 6e-59 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.K01228.2.p |
Entrez Gene | 104425055 |