PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.K01228.1.p

Common Name

EUGRSUZ_K01228, LOC104425055

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 298aa MW: 34186.4 Da PI: 7.4966

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.K01228.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154.7	3.9e-48	26	153	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pGfrF Ptdeelv +yL++kve+k+l++ e+ik+vdiyk++PwdL+ k +eke yfF+ r +ky+++ r+nr+t sg+Wkatg dk+++s Eucgr.K01228.1.p 26 LPGFRFYPTDEELVGFYLRRKVEKKPLKI-EFIKQVDIYKYDPWDLHDVSKMGEKEGYFFCIRGRKYKNSIRPNRVTGSGFWKATGIDKPIYS 117 69*************************.99**********977777999********************************** PP NAM 95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ vglkktLv+y+g+a +g+ktdW+mhe+rl Eucgr.K01228.1.p 118 GkyPHNCVGLKKTLVYYRGSAGRGTKTDWMMHEFRL 153 7555566*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.2E-53	24	183	IPR003441	NAC domain
PROSITE profile	PS51005	51.375	25	184	IPR003441	NAC domain
Pfam	PF02365	8.7E-24	27	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MEQRDSSDTR LHDKKKNKDD EEEVILPGFR FYPTDEELVG FYLRRKVEKK PLKIEFIKQV 60 DIYKYDPWDL HDVSKMGEKE GYFFCIRGRK YKNSIRPNRV TGSGFWKATG IDKPIYSGKY 120 PHNCVGLKKT LVYYRGSAGR GTKTDWMMHE FRLPPVEKGG DLSDANDTVT EEAEVWTLCR 180 IFKRIASSRK YIATTECKET TFKQSSINSC SKSSSFESEY GDQCLSFGSD HSAVQPSDQK 240 PATRHVEQAQ LSWVNHCHSI PQAPVATPCL SLWNLNGDDI FANGINWDEL RSIVHEE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-45	27	190	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-45	27	190	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-45	27	190	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-45	27	190	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-45	27	190	22	174	NAC domain-containing protein 19
3swm_B	1e-45	27	190	22	174	NAC domain-containing protein 19
3swm_C	1e-45	27	190	22	174	NAC domain-containing protein 19
3swm_D	1e-45	27	190	22	174	NAC domain-containing protein 19
3swp_A	1e-45	27	190	22	174	NAC domain-containing protein 19
3swp_B	1e-45	27	190	22	174	NAC domain-containing protein 19
3swp_C	1e-45	27	190	22	174	NAC domain-containing protein 19
3swp_D	1e-45	27	190	22	174	NAC domain-containing protein 19
4dul_A	1e-45	27	190	19	171	NAC domain-containing protein 19
4dul_B	1e-45	27	190	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.K01228.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010035934.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1
Swissprot	Q9SK55	3e-95	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A059A001	0.0	A0A059A001_EUCGR; Uncharacterized protein
STRING	XP_010035934.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	4e-90	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	Eucgr.K01228.1.p
Entrez Gene	104425055

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]