PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K01091.4.p
Common NameEUGRSUZ_K01091
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Whirly
Protein Properties Length: 219aa    MW: 23954.5 Da    PI: 9.9837
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K01091.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly199.64.1e-62652012137
            Whirly   2 vyktkaalkvkavrptfealdsgn.lklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrka 93 
                       vyk+kaal++ +v+ptf++l+sg+ lk++r+G ++l++ +a++erkydWek+q falsate ++l++l+sk+sceffhdp++ +sn+G+vrk+
  Eucgr.K01091.4.p  65 VYKGKAALSLSPVLPTFSKLESGAgLKVDRHGVMMLRFWPAIGERKYDWEKRQLFALSATETGSLISLGSKDSCEFFHDPSMLSSNAGQVRKS 157
                       9*********************97589****************************************************************** PP

            Whirly  94 lkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                       l+++P++dG G+f++lsv+n+++k+ne+f+vPv+ aefav++++
  Eucgr.K01091.4.p 158 LSIKPHADGGGYFISLSVNNNILKTNERFTVPVTAAEFAVMKTA 201
                       ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.108.9E-6454203IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544474.87E-5557204IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.9E-5965200IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDHFRRKLWT IRMDLSGRNL LGDAVCCRVS SFNHSRISGA GYSTARQNFN AAGGTINRIF  60
APYCVYKGKA ALSLSPVLPT FSKLESGAGL KVDRHGVMML RFWPAIGERK YDWEKRQLFA  120
LSATETGSLI SLGSKDSCEF FHDPSMLSSN AGQVRKSLSI KPHADGGGYF ISLSVNNNIL  180
KTNERFTVPV TAAEFAVMKT ACSVFCFASH HGLGPVYQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A1e-82522144162StWhy2
3n1i_A1e-82522144162protein StWhy2
3n1j_A1e-82522144162Protein StWhy2
3n1k_A1e-82522144162protein StWhy2
3n1l_A1e-82522144162protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K01091.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035836.11e-150PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial
SwissprotD9J0341e-87WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A059A0T61e-162A0A059A0T6_EUCGR; Uncharacterized protein
STRINGXP_010035836.11e-149(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.15e-81WHIRLY 2