PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.K01091.3.p | ||||||||
Common Name | EUGRSUZ_K01091, LOC104424980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | Whirly | ||||||||
Protein Properties | Length: 242aa MW: 26818.6 Da PI: 9.7853 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 199.2 | 5.4e-62 | 65 | 201 | 2 | 137 |
Whirly 2 vyktkaalkvkavrptfealdsgn.lklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrka 93 vyk+kaal++ +v+ptf++l+sg+ lk++r+G ++l++ +a++erkydWek+q falsate ++l++l+sk+sceffhdp++ +sn+G+vrk+ Eucgr.K01091.3.p 65 VYKGKAALSLSPVLPTFSKLESGAgLKVDRHGVMMLRFWPAIGERKYDWEKRQLFALSATETGSLISLGSKDSCEFFHDPSMLSSNAGQVRKS 157 9*********************97589****************************************************************** PP Whirly 94 lkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 l+++P++dG G+f++lsv+n+++k+ne+f+vPv+ aefav++++ Eucgr.K01091.3.p 158 LSIKPHADGGGYFISLSVNNNILKTNERFTVPVTAAEFAVMKTA 201 ******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 7.8E-74 | 54 | 221 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 6.51E-65 | 57 | 234 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 3.8E-59 | 65 | 200 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MDHFRRKLWT IRMDLSGRNL LGDAVCCRVS SFNHSRISGA GYSTARQNFN AAGGTINRIF 60 APYCVYKGKA ALSLSPVLPT FSKLESGAGL KVDRHGVMML RFWPAIGERK YDWEKRQLFA 120 LSATETGSLI SLGSKDSCEF FHDPSMLSSN AGQVRKSLSI KPHADGGGYF ISLSVNNNIL 180 KTNERFTVPV TAAEFAVMKT ACSFALPHIM GWDRYTNNQR HGAEESPSKV DKQILDLEWD 240 K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3n1h_A | 2e-93 | 52 | 217 | 4 | 168 | StWhy2 |
3n1i_A | 2e-93 | 52 | 217 | 4 | 168 | protein StWhy2 |
3n1j_A | 2e-93 | 52 | 217 | 4 | 168 | Protein StWhy2 |
3n1k_A | 2e-93 | 52 | 217 | 4 | 168 | protein StWhy2 |
3n1l_A | 2e-93 | 52 | 217 | 4 | 168 | protein StWhy2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.K01091.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010035836.1 | 0.0 | PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial | ||||
Swissprot | D9J034 | 1e-106 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A058ZZG4 | 0.0 | A0A058ZZG4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010035836.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 4e-92 | WHIRLY 2 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.K01091.3.p |
Entrez Gene | 104424980 |