PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.K01062.1.p | ||||||||
Common Name | EUGRSUZ_K01062, LOC104424952 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 483aa MW: 52928.3 Da PI: 8.6915 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.3e-05 | 65 | 85 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H Eucgr.K01062.1.p 65 CEICGKGFQRDQNLQLHRRGH 85 *******************88 PP | |||||||
2 | zf-C2H2 | 12.8 | 0.00037 | 139 | 161 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C k++ +s+ k H +t+ Eucgr.K01062.1.p 139 WKCEKCEKRYAVQSDWKAHSKTC 161 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.04E-6 | 62 | 85 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.2E-5 | 62 | 85 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.076 | 63 | 85 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.489 | 63 | 85 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 65 | 85 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 250 | 104 | 134 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.5E-4 | 127 | 160 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.04E-6 | 134 | 159 | No hit | No description |
SMART | SM00355 | 140 | 139 | 159 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 483 aa Download sequence Send to blast |
MLENMSSQEV IANGFAHQNP SIPGSNPPPP SATKKKRNLP GTPDPEAEVI ALSPKTLMAT 60 NRFLCEICGK GFQRDQNLQL HRRGHNLPWK LKQRSTKEPR KRVYVCPEKT CVHNHPSRAL 120 GDLTGIKKHF CRKHGEKKWK CEKCEKRYAV QSDWKAHSKT CGTREYRCDC GTLFSRRDSF 180 ITHRAFCDAL AEETARVNAA STIHPTAAYH FMGTSLLPPN LPPNLSSIFK PISSNMSAEP 240 MINHQPRNGG GLSLWMGQTS QPQESSLGIN LQEIHQLGSL NDPSATHLYA DNTCPTNNPP 300 PSDHNLSGWV FGSRFSSSTA CEDISINTPS LHHMKEGQNH HHHQNNILSV PSLYSTQHQQ 360 PASSPANMSA TALLQKAAQM GAATEPSFLG SFGLKPSDNN GQQPQDQDNK FCGLFGSSQM 420 PSSDTAENIT LSTMQAYPPP AKRRNITQSD DNNASSGGGQ TRDFLGVGVH TMCNPPSING 480 WI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-35 | 135 | 201 | 3 | 69 | Zinc finger protein JACKDAW |
5b3h_F | 2e-35 | 135 | 201 | 3 | 69 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.K01062.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010035803.1 | 0.0 | PREDICTED: zinc finger protein NUTCRACKER | ||||
Swissprot | Q9FFH3 | 1e-144 | IDD8_ARATH; Zinc finger protein NUTCRACKER | ||||
TrEMBL | A0A059A0Q1 | 0.0 | A0A059A0Q1_EUCGR; Uncharacterized protein | ||||
STRING | XP_010035803.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3710 | 26 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44160.1 | 1e-133 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.K01062.1.p |
Entrez Gene | 104424952 |
Publications ? help Back to Top | |||
---|---|---|---|
|