PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.K01061.1.p | ||||||||
Common Name | EUGRSUZ_K01061, LOC104424951 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 297aa MW: 33600.7 Da PI: 9.664 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.1 | 2.1e-33 | 62 | 202 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 lp+G++F+Ptd+el+ e+L+ kv+ + +l++ +++ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ Eucgr.K01061.1.p 62 LPAGVKFDPTDQELL-EHLEGKVRPDARKLHRlidqfipTLQGEnGICYTHPEKLP-GVSKNGMIRHFFHRPSKAYTTGNRKRRKVHtdeegg 152 799************.99*****99984443333343332343337**********.555556677******************744456555 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v+ kgel+g kk+Lv+y g+++k+ekt+Wvmh+y+l Eucgr.K01061.1.p 153 ETRWHKTGKTRPVFM-KGELKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 202 778************.999***********6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-37 | 56 | 221 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.596 | 62 | 221 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-15 | 63 | 202 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MTWCNNDNKS DEQRNESATS PPPSNNKAGV VAKRPPVFRT CPSCGHEFEI QDQTGIQELP 60 GLPAGVKFDP TDQELLEHLE GKVRPDARKL HRLIDQFIPT LQGENGICYT HPEKLPGVSK 120 NGMIRHFFHR PSKAYTTGNR KRRKVHTDEE GGETRWHKTG KTRPVFMKGE LKGYKKILVL 180 YTNYGKQRKP EKTNWVMHQY HLGNNEEEKE GELVVSKVFY QTQPRQCGSL MKDSSSLKLN 240 GPSGHENANL KNNPALVEYY NSSYISFDQG SQNRASSQHQ MIPRHFAVHG GSSFVS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.K01061.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010035802.1 | 0.0 | PREDICTED: NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 1e-122 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A059A1Q4 | 0.0 | A0A059A1Q4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010035802.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2012 | 28 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-112 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.K01061.1.p |
Entrez Gene | 104424951 |
Publications ? help Back to Top | |||
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