PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K01058.1.p
Common NameEUGRSUZ_K01058, LOC104424949
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HB-other
Protein Properties Length: 1804aa    MW: 200235 Da    PI: 4.8039
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K01058.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-1854110157
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                       ++kR   t++qle+Le+ ++ ++yps++ r+eL+ +lgL++rq ++WF+ rR k++k
  Eucgr.K01058.1.p  54 KSKRKMKTASQLEILEKTYAVEPYPSEAIRTELSGQLGLSDRQLQMWFCHRRLKDRK 110
                       679****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-1839110IPR009057Homeodomain-like
SuperFamilySSF466891.41E-1550110IPR009057Homeodomain-like
PROSITE profilePS5007116.63351111IPR001356Homeobox domain
SMARTSM003899.4E-1753115IPR001356Homeobox domain
PfamPF000463.0E-1654110IPR001356Homeobox domain
CDDcd000861.33E-1454110No hitNo description
SMARTSM005716.2E-21578637IPR018501DDT domain
PROSITE profilePS5082716.399578637IPR018501DDT domain
PfamPF027911.2E-15579634IPR018501DDT domain
PfamPF050662.6E-14762829IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.1E-89771019IPR028942WHIM1 domain
PfamPF156137.4E-1211581230IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1804 aa     Download sequence    Send to blast
MEEEEVAAAA AGPSSSGGGA AAGGGGGGGA GSGGDGGGGG GDAEKKKTAE GEGKSKRKMK  60
TASQLEILEK TYAVEPYPSE AIRTELSGQL GLSDRQLQMW FCHRRLKDRK GPSKRQRKDS  120
PAAAAPEPMS VGGEAANELP YGAVAGSSSF APAVDPWRAA PRVGTAVARI SGDYPVIKRH  180
YEPEPSMAER HAIAFVEAQL GEPLREDGPI LGMEFDPLPP GAFGTPIGGA VMGQHKQTGR  240
SFEAKYERSD AKSIKGVVRP VHEYQFLPEK PTVRAETYER VVPPYHGGSD GSNPRISAGP  300
PFLHANEPMP SGYGLQNRMP TLSLLTPPGK QGHLLTSTPG EYDLDPSKTS STNLEIENRL  360
GAHSASALDN PIVSSDRRVI HNEELLRAER KRKSEEARIQ REVEAHEKRI RKELKKQDIL  420
RRKREEQVRK EMERLDRERR KEEERLLREK QREVERYQRE QRRELERREK FLQKESRRAE  480
KQRRKEQARR EKEAARLKAA NERAIARRMA KESVELIEDE QLELMEFAAS SKELPSIMSL  540
DFETLQNLEL YRDSMTAFPS ISVQMKRPFA IQPWSHSEEN IGNLLMAWRF VITFADVLGL  600
WPFTLDEFVQ AFHDYDARLL GEIHVSLLRT IIKDIEDVAR TPSTNVGANL NSVANPGGGH  660
PHIVEGAYSW GFDIRTWQRQ LNPLTWPEIL RQFVLSAGFG PQLKKKNVEA AYIHEDHEGQ  720
GNDGQDIISI LRNGAAAENA FAKMQQRGFS NLRRSRHRLT PGTVKFAAFH VLSLEGDDGL  780
SILEVADRIQ KCGLRDLTTS KTPEASVAAA LSRDTKLFER TAPSTYCVRP AYRKDPVDAE  840
AILSAARERI REFKTELVDE EEADDAERDE DSESESTEDP EVDDLNAELN AQVEVSQRDV  900
DLLGVKTLSG DGKDDADEID ISQNGMERAN GDSSLMCPED LIKDEDASVP VDRGDGGIQD  960
EVTDNQQDTD IDESNPGEPW VQGLMEGEYS DLSVEERLNA LVAIIGVAIE GNSIRSVLEE  1020
RLEAATALKK QMWAEAQLDK RRTKEDYLMK IHHPLQMASK TEANVPNISS AEGKLSPLLA  1080
VDGGNNEMPV DPAIQRESMM VQQNPSPLIT SEGNVHVQDI PGGSENFSLQ QVGYAAEMSR  1140
SQLKSYIGYK AEELYVYRSL PLGQDRRRNR YWQFVTSNSR NDPGCGRIFV ELHDGRWRLI  1200
DSEEGFNSLL ASLDVRGVRE SYLHFMLQRI ESSFKESVRR NAICTGGKRT SEEKVKREAL  1260
EVPHGSDASI GIDSPSSSVC GVDPETSETS TSFEIELGRN RHEKDGALKR YQEFENWIWK  1320
ECLSPSVLYA IKYGKERCVP LLNACDRCHE INSMDYDNCP SCCWTSTTSK NDLYLSESAA  1380
PSEHKLHMLP DPTKHGSVSS PVKTRLLKVL LALVEAFVPP EALESVWTDD YRKSWGMKLR  1440
TSSSTSDLLQ ALTLLESAIR RDYLAPNFET TNELLSISSG FASDISVSLE ALIVLPWIPQ  1500
TTAAVALRLM EFDSAISYSL HQKAESAVDE GSGDFVKFPS RYMGTRSWHN HDSAATPFRG  1560
GPVDENWADP GPALARSGRR RGRGTGRGLS RTGGRRSQRR IPGGPRFDSG KKARVANGER  1620
GRSRGRGGRR RGRRSTRNRQ RAVKKEVPVF DERDDTKELM MEESPGVLIE DGWNGDDGNN  1680
VGLNLEEAEN SSSSESSEFE DEDGQATGSY RYDLAADDYS GGLNGKADEL SEASDDNMDG  1740
NEEVEEEEDD DEDEGDDGGG DLDVREYING EFDEEEEDTR AIDGFENVDP DEGTGSTSSE  1800
YSD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K01058.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035800.10.0PREDICTED: homeobox-DDT domain protein RLT2
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A059A0P60.0A0A059A0P6_EUCGR; Uncharacterized protein
STRINGXP_010035800.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96012530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator