PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K00844.1.p
Common NameEUGRSUZ_K00811, LOC104424773
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 377aa    MW: 42072.9 Da    PI: 9.7795
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K00844.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.48.1e-06731127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      +kt+lC  ++r G+C++  +C+FaHg+
  Eucgr.K00844.1.p  7 FKTKLCVLYQR-GHCNR-QSCSFAHGQ 31
                      69*********.*****.*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.91E-5336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-9535IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.408632IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MVDRKLFKTK LCVLYQRGHC NRQSCSFAHG QAELRRFVGG PTTVGGTTRG GDLRNKIGRR  60
YSPWRRFSPG KDARARHGFH GYSPSRSPEE NSDRKRRKKQ HLDGQSDASD LNLPEEAEDR  120
EIVGKSTSSQ SKFALLDQLK QVRSDINMLK HHKNQQEMYL EEQLQEADSL SSKIQELEDQ  180
LHKEKKECKR ITSKIKKFVK AHQRYSRSQD ELKRSELQLH NLGDQLGMDA IGVGNNEEDS  240
SVNIVSDGEP TGNYVASPKS RLKYSQGKAY PQVNDDKDEE GNGQKNGPKQ ADEGKSKREK  300
AVSSSISSAE KVLPKGPLIG MTLPPTGNEV AVSKGFPSSI QSLPSVHKNS FSQYKHNSEN  360
VDLKGLGEET VNVDNV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K00844.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035575.10.0PREDICTED: zinc finger CCCH domain-containing protein 13
TrEMBLA0A059A0050.0A0A059A005_EUCGR; Uncharacterized protein
STRINGXP_010035575.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100692127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-44C3H family protein