PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K00734.1.p
Common NameEUGRSUZ_K00734, LOC104424709
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 219aa    MW: 22781.3 Da    PI: 5.841
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K00734.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.4e-162574255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr ++ +g+++AeIrdp    k+ r++lg+f tae+Aa+a++ a++ ++g
  Eucgr.K00734.1.p 25 RYRGVRKRP-WGKFAAEIRDPA---KKCRIWLGTFATAEDAARAYDVAARGIYG 74
                      59*******.**********84...369********************987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.5E-352588IPR001471AP2/ERF domain
PfamPF008471.8E-102570IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-302582IPR001471AP2/ERF domain
PROSITE profilePS5103222.4842582IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-212583IPR016177DNA-binding domain
CDDcd000181.49E-282584No hitNo description
PRINTSPR003671.2E-102637IPR001471AP2/ERF domain
PRINTSPR003671.2E-104864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MRRPGATAGA AGFAAADARS PPEIRYRGVR KRPWGKFAAE IRDPAKKCRI WLGTFATAED  60
AARAYDVAAR GIYGAKARTN FAADPQSVGS QATGLDQAHN RPDLEVASDG FDASRPTSSS  120
LSSTVESFGG PRVANRVPVA VAAADRRPVQ PVPGDDCHSD CGSSSSVVDE VEDCCATPAP  180
APLSRRALPF DLNLPPQMDC AGGSDELNGD DLATALRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-192681662ATERF1
3gcc_A2e-192681662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K00734.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035499.11e-155PREDICTED: ethylene-responsive transcription factor 3
SwissprotO803392e-29ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A058ZZN51e-154A0A058ZZN5_EUCGR; Uncharacterized protein
STRINGXP_010035499.11e-154(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.14e-18ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]