PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K00331.1.p
Common NameEUGRSUZ_K00331
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 350aa    MW: 38116.1 Da    PI: 5.3722
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K00331.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY941.1e-29132193159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs++dp+++e+tY+g+H+++
  Eucgr.K00331.1.p 132 LDDGFSWRKYGQKDILGAKYPRGYYRCTHRnvqGCLATKQVQRSDDDPTIFEVTYRGRHTCN 193
                       59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.238127190IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-29129194IPR003657WRKY domain
SuperFamilySSF1182902.09E-26131194IPR003657WRKY domain
SMARTSM007742.2E-42132194IPR003657WRKY domain
PfamPF031061.9E-27133192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MENMGDWEKI TLLNELTQGR ELTKQLQHQL HSAVSLLSSS SSSSHDQTQE MLIHRIMASY  60
DKALSMLNVE PQAGGCPRRA SESPPSLGGS PMSGGDSDRD LNDGSTPRKR KVMQRWTKRV  120
RVALGTGLEG PLDDGFSWRK YGQKDILGAK YPRGYYRCTH RNVQGCLATK QVQRSDDDPT  180
IFEVTYRGRH TCNQHPAAVI SPSLPPENQT DFNASDIAFD FREGLAIATQ NLDSNNGNHN  240
PSSSMFIFPS TPENIFGVMN SNSNFSSNPD FLSLSTSGTD CFSVPPARLD SFQAGPSFGA  300
PESELAMIVS AAASGNNPHA NARSDSDLPL QGMEFANENI AFDGTEFFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-22132192868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K00331.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035220.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A058ZXI60.0A0A058ZXI6_EUCGR; Uncharacterized protein
STRINGXP_010035220.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-46WRKY family protein