PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K00220.1.p
Common NameEUGRSUZ_K00220
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 163aa    MW: 17828.1 Da    PI: 5.7074
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K00220.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.21.3e-151462255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       y+G+r  ++  +Wv+eIr+p+    + +r++lg++ t+e+Aa+a++ a+++l+g
  Eucgr.K00220.1.p 14 EYRGIR--SRGRKWVSEIREPR----KaTRIWLGTYPTPEMAAAAYDVAALALKG 62
                      59***7..44568*******94....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-91462IPR001471AP2/ERF domain
PROSITE profilePS5103219.191470IPR001471AP2/ERF domain
SMARTSM003804.1E-251476IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-261471IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-171572IPR016177DNA-binding domain
CDDcd000183.65E-141572No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
SPACHPPVSR RHPEYRGIRS RGRKWVSEIR EPRKATRIWL GTYPTPEMAA AAYDVAALAL  60
KGPGALLNFP SSVLTYPIPP STSPSDIRAT ASRAATARLL RWDLGIDSNE HTAASGQEFI  120
DEDAILNMPN LLADMAEGML LSPPRPEESQ EYSDAEGLWN YL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-13870872Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K00220.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038425.11e-115PREDICTED: ethylene-responsive transcription factor ERF027
SwissprotQ9SJR08e-44ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A058ZX411e-113A0A058ZX41_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010038425.11e-114(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.12e-33ERF family protein